#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005441-DNA_C09.hs38DH/LP6005441-DNA_C09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_C09.hs38DH/QCmetrics/LP6005441-DNA_C09.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 18.591 5.7808 18 3 0 0.019186 0.0026954 0.05131 0.0027421 0.00017992 0.076113 0.99708 0.98768 0.95948 0.79097 0.41991 0.12454 0.023427 0.0020826 0.00082425 0.00047444 0.00031821 0.00023513 0.0001786 0.00013932 0.99035 20 coverage high_quality_coverage_count 0 443716 1 370639 2 355720 3 346909 4 356871 5 393499 6 495269 7 699313 8 1064985 9 1636089 10 2465127 11 3581887 12 4949237 13 6510001 14 8126897 15 9654810 16 10902467 17 11764157 18 12136917 19 11985048 20 11371501 21 10376209 22 9114345 23 7735604 24 6332201 25 5027829 26 3868236 27 2888511 28 2100992 29 1495795 30 1044522 31 716187 32 488349 33 330750 34 224639 35 153990 36 106970 37 77798 38 58691 39 44878 40 36147 41 29692 42 24556 43 20607 44 18044 45 16085 46 13863 47 12258 48 10612 49 9541 50 8346 51 7519 52 6620 53 5767 54 5248 55 4695 56 4186 57 3775 58 3578 59 3478 60 3175 61 2816 62 2778 63 2675 64 2433 65 2285 66 2204 67 1955 68 1793 69 1651 70 1571 71 1512 72 1459 73 1392 74 1353 75 1243 76 1122 77 1087 78 987 79 912 80 952 81 929 82 930 83 946 84 877 85 901 86 842 87 725 88 778 89 719 90 709 91 660 92 657 93 641 94 564 95 595 96 562 97 568 98 532 99 487 100 464 101 480 102 434 103 424 104 443 105 449 106 451 107 384 108 422 109 390 110 373 111 357 112 356 113 343 114 338 115 341 116 330 117 310 118 343 119 299 120 318 121 253 122 247 123 230 124 288 125 257 126 246 127 221 128 224 129 209 130 226 131 201 132 211 133 248 134 247 135 259 136 227 137 200 138 240 139 225 140 175 141 205 142 185 143 164 144 153 145 148 146 130 147 143 148 129 149 99 150 138 151 138 152 129 153 95 154 108 155 105 156 99 157 91 158 98 159 100 160 93 161 100 162 98 163 86 164 82 165 92 166 83 167 98 168 94 169 96 170 83 171 78 172 76 173 72 174 75 175 70 176 60 177 47 178 59 179 50 180 57 181 46 182 51 183 42 184 52 185 47 186 42 187 50 188 50 189 53 190 42 191 40 192 47 193 44 194 55 195 51 196 53 197 50 198 53 199 53 200 65 201 67 202 64 203 73 204 63 205 54 206 39 207 43 208 56 209 47 210 42 211 49 212 42 213 41 214 37 215 30 216 43 217 32 218 33 219 32 220 26 221 30 222 32 223 21 224 32 225 30 226 37 227 32 228 26 229 35 230 35 231 45 232 47 233 29 234 31 235 29 236 30 237 12 238 25 239 32 240 30 241 27 242 27 243 29 244 27 245 31 246 26 247 20 248 23 249 30 250 1644