#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_C10.hs38DH/LP6005441-DNA_C10.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_C10.hs38DH/QCmetrics/LP6005441-DNA_C10.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 37.438 11.415 37 5 0 0.0333 0.0013109 0.052002 0.0035069 0.011711 0.10183 0.9988 0.99676 0.99423 0.9898 0.9783 0.94121 0.83557 0.37856 0.063917 0.010457 0.005919 0.0044034 0.0034288 0.0027601 0.9977 26 coverage high_quality_coverage_count 0 3306769 1 1641256 2 1390298 3 1303130 4 1265689 5 1262637 6 1294219 7 1362290 8 1452010 9 1587171 10 1774005 11 2022639 12 2341289 13 2751667 14 3278694 15 3950444 16 4828058 17 5963669 18 7454621 19 9386637 20 11919896 21 15189790 22 19361272 23 24553612 24 30917624 25 38495284 26 47267035 27 57158557 28 67969341 29 79391488 30 91048628 31 102518704 32 113308143 33 122912744 34 130878357 35 136801683 36 140431612 37 141515687 38 140106145 39 136332407 40 130369960 41 122510660 42 113255630 43 102958425 44 92079242 45 81056849 46 70247202 47 59939108 48 50425290 49 41787048 50 34153396 51 27542388 52 21924593 53 17267326 54 13460092 55 10376446 56 7961186 57 6067370 58 4625454 59 3528380 60 2708292 61 2099189 62 1651127 63 1325117 64 1088532 65 913822 66 789887 67 695826 68 625489 69 571602 70 527209 71 493751 72 464835 73 439352 74 417010 75 398318 76 379904 77 363986 78 347577 79 332903 80 317860 81 306899 82 293309 83 281534 84 270864 85 260586 86 250947 87 241157 88 231862 89 223154 90 214471 91 206314 92 199327 93 192947 94 186298 95 179293 96 173463 97 167634 98 161774 99 156069 100 150641 101 145883 102 140399 103 135883 104 131866 105 127520 106 122933 107 119443 108 115918 109 111560 110 108083 111 104735 112 101996 113 98722 114 95898 115 92958 116 89824 117 86872 118 84295 119 82384 120 79665 121 77297 122 75545 123 73840 124 72491 125 70162 126 68634 127 66728 128 65509 129 63213 130 62417 131 60004 132 58390 133 56820 134 55270 135 54304 136 52599 137 51668 138 50720 139 49573 140 48399 141 47827 142 46198 143 44626 144 43945 145 42786 146 41757 147 40659 148 39704 149 39012 150 38391 151 37573 152 36751 153 36131 154 35235 155 34784 156 33878 157 33172 158 32615 159 31897 160 31318 161 30912 162 30185 163 29774 164 29161 165 28753 166 28440 167 27605 168 27289 169 26746 170 26159 171 25894 172 25435 173 25280 174 24603 175 24331 176 24190 177 23743 178 23251 179 22892 180 22407 181 22409 182 22053 183 21557 184 21242 185 20964 186 20701 187 20296 188 19980 189 19782 190 19458 191 19203 192 18997 193 18792 194 18709 195 18499 196 18312 197 17924 198 17834 199 17747 200 17383 201 16947 202 16734 203 16515 204 16316 205 16183 206 16127 207 15679 208 15512 209 15291 210 15257 211 15094 212 14752 213 14680 214 14264 215 13966 216 13843 217 13527 218 13438 219 13426 220 13196 221 12841 222 12860 223 12773 224 12507 225 12551 226 12210 227 12033 228 11906 229 11711 230 11663 231 11533 232 11355 233 11228 234 11036 235 10873 236 10715 237 10654 238 10326 239 10434 240 10256 241 10097 242 9937 243 9732 244 9620 245 9545 246 9652 247 9547 248 9430 249 9030 250 1717634