#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005441-DNA_D01.hs38DH/LP6005441-DNA_D01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_D01.hs38DH/QCmetrics/LP6005441-DNA_D01.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 19.386 5.7713 19 3 0 0.011727 0.0015451 0.065501 0.0062206 0.00021438 0.085208 0.99865 0.99432 0.97285 0.83358 0.47714 0.15306 0.029974 0.0024654 0.0010279 0.00058718 0.00039895 0.00030296 0.00023682 0.00018633 0.99465 23 coverage high_quality_coverage_count 0 204931 1 120820 2 144114 3 175929 4 218183 5 279727 6 377339 7 542785 8 816377 9 1249702 10 1900802 11 2813213 12 4004128 13 5439007 14 7027171 15 8632378 16 10105860 17 11267115 18 11997503 19 12218104 20 11923932 21 11183004 22 10087729 23 8759078 24 7342330 25 5948689 26 4671320 27 3558706 28 2635328 29 1909570 30 1349124 31 932655 32 635294 33 429145 34 288506 35 196454 36 135024 37 95475 38 70016 39 52757 40 41647 41 33689 42 27626 43 23779 44 20623 45 17717 46 15568 47 14084 48 12489 49 11436 50 10353 51 9148 52 8233 53 7376 54 6612 55 6110 56 5488 57 5084 58 4391 59 4246 60 3939 61 3614 62 3292 63 3055 64 2970 65 2615 66 2498 67 2399 68 2204 69 2046 70 1821 71 1718 72 1667 73 1510 74 1463 75 1358 76 1348 77 1269 78 1313 79 1135 80 1128 81 1100 82 1036 83 1064 84 1065 85 940 86 963 87 924 88 920 89 921 90 854 91 869 92 845 93 815 94 822 95 768 96 725 97 684 98 649 99 649 100 637 101 627 102 635 103 592 104 618 105 552 106 518 107 504 108 513 109 501 110 483 111 442 112 453 113 420 114 416 115 423 116 387 117 392 118 355 119 330 120 349 121 332 122 340 123 323 124 294 125 308 126 279 127 262 128 236 129 251 130 261 131 256 132 221 133 259 134 222 135 224 136 219 137 198 138 238 139 224 140 228 141 175 142 168 143 219 144 191 145 199 146 170 147 186 148 175 149 153 150 197 151 172 152 201 153 177 154 144 155 174 156 147 157 155 158 157 159 162 160 158 161 139 162 143 163 147 164 148 165 133 166 138 167 112 168 140 169 96 170 130 171 112 172 113 173 116 174 102 175 122 176 110 177 97 178 106 179 96 180 90 181 109 182 109 183 95 184 86 185 112 186 109 187 102 188 91 189 111 190 117 191 102 192 96 193 86 194 87 195 89 196 87 197 104 198 59 199 87 200 72 201 85 202 73 203 72 204 69 205 60 206 82 207 79 208 58 209 64 210 73 211 70 212 59 213 74 214 64 215 44 216 49 217 71 218 45 219 67 220 68 221 72 222 52 223 56 224 64 225 54 226 51 227 50 228 64 229 48 230 53 231 50 232 37 233 45 234 44 235 35 236 45 237 32 238 42 239 33 240 25 241 31 242 44 243 32 244 42 245 36 246 38 247 43 248 31 249 40 250 2626