#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005441-DNA_D02.hs38DH/LP6005441-DNA_D02.hs38DH.cram --algo AlignmentStat SGDP/LP6005441-DNA_D02.hs38DH/QCmetrics/LP6005441-DNA_D02.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	581767157	581767157	1.000000	0	575411239	0.989075	57110333063	539563549	53679716131	51850206790	0.000000	0.003415	0.002951	0.000202	100.000000	574210777	0.997914	0	0.500185	0.018833	0.000018	
SECOND_OF_PAIR	581767157	581767157	1.000000	0	575010173	0.988385	56916643430	538395589	53472228188	50939879616	0.000000	0.003969	0.003495	0.000202	100.000000	574210777	0.998610	0	0.500235	0.019126	0.001039	
PAIR	1163534314	1163534314	1.000000	0	1150421412	0.988730	114026976493	1077959138	107151944319	102790086406	0.000000	0.003692	0.003222	0.000202	100.000000	1148421554	0.998262	0	0.500210	0.018979	0.000529