#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_D02.hs38DH/LP6005441-DNA_D02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_D02.hs38DH/QCmetrics/LP6005441-DNA_D02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 35.87 11.173 35 5 0 0.019019 0.00099304 0.039814 0.0057061 0.012658 0.07819 0.99875 0.99679 0.9943 0.9899 0.97734 0.93042 0.79321 0.29041 0.040271 0.0091342 0.0058109 0.004298 0.0033526 0.0027159 0.99771 26 coverage high_quality_coverage_count 0 3423671 1 1570913 2 1338943 3 1269889 4 1230093 5 1232375 6 1267755 7 1334826 8 1430196 9 1563390 10 1739422 11 1990712 12 2310053 13 2740322 14 3301822 15 4037599 16 5042955 17 6402460 18 8265476 19 10779067 20 14160806 21 18622343 22 24361158 23 31538202 24 40249946 25 50464290 26 62065680 27 74776058 28 88148181 29 101595325 30 114551560 31 126298000 32 136240548 33 143828966 34 148617090 35 150372901 36 149149803 37 144983066 38 138247070 39 129386294 40 118895180 41 107318793 42 95200741 43 83055314 44 71300627 45 60285333 46 50194575 47 41174058 48 33309999 49 26638240 50 21046802 51 16453608 52 12736998 53 9785285 54 7487404 55 5707734 56 4359823 57 3347706 58 2596849 59 2040726 60 1639502 61 1340238 62 1124249 63 966220 64 847566 65 757404 66 686371 67 631884 68 587330 69 551393 70 519021 71 492544 72 466267 73 443568 74 420169 75 399466 76 378520 77 362381 78 345643 79 329754 80 313879 81 300204 82 287163 83 274360 84 262823 85 250652 86 241552 87 231607 88 221926 89 213997 90 204494 91 197822 92 190101 93 183131 94 176767 95 170412 96 165339 97 159216 98 153331 99 148960 100 144014 101 139663 102 135332 103 131025 104 127191 105 123989 106 119751 107 115556 108 112816 109 108789 110 105486 111 102164 112 98883 113 95822 114 93107 115 90017 116 87459 117 84641 118 81880 119 79489 120 76603 121 74696 122 72739 123 71355 124 69001 125 67106 126 65493 127 63352 128 62530 129 60799 130 58396 131 57249 132 55944 133 54574 134 53560 135 52223 136 50567 137 50058 138 48406 139 47333 140 46630 141 45880 142 44463 143 43475 144 43184 145 42076 146 41109 147 40315 148 39259 149 38727 150 38166 151 37330 152 36655 153 35348 154 35303 155 34213 156 33960 157 33422 158 32779 159 32206 160 31573 161 31357 162 30967 163 29891 164 29571 165 29066 166 28394 167 27835 168 27499 169 27115 170 26464 171 26119 172 25463 173 25439 174 25099 175 24304 176 24358 177 23656 178 23757 179 23150 180 22821 181 22421 182 22097 183 21850 184 21474 185 20792 186 20732 187 20403 188 20014 189 19762 190 19560 191 19267 192 19048 193 18628 194 18047 195 17989 196 17597 197 17253 198 17167 199 17212 200 17057 201 16401 202 16386 203 16149 204 15650 205 15463 206 15457 207 15117 208 14796 209 14539 210 14327 211 14115 212 13682 213 13606 214 13481 215 13277 216 12776 217 12723 218 12628 219 12423 220 12188 221 12220 222 11960 223 11993 224 11880 225 11803 226 11205 227 11150 228 11142 229 11094 230 10971 231 10762 232 10555 233 10464 234 10581 235 10360 236 10141 237 10014 238 9924 239 9823 240 9601 241 9705 242 9482 243 9261 244 9182 245 9019 246 8960 247 8850 248 8774 249 8810 250 1762441