#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_D02.hs38DH/LP6005441-DNA_D02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_D02.hs38DH/QCmetrics/LP6005441-DNA_D02.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.385	17.46	0	0	0	0.057358	0.0037905	0.035883	0.027976	0.41123	0.53624	0.14075	0.062264	0.034172	0.023694	0.019055	0.01638	0.014417	0.011876	0.010375	0.0093306	0.0085347	0.0078854	0.0073363	0.0068309	0.10189	0	

coverage	high_quality_coverage_count	
0	20309568
1	819262
2	457550
3	328758
4	249528
5	194031
6	154499
7	126728
8	103437
9	85304
10	69120
11	57478
12	48569
13	39917
14	32572
15	28577
16	24532
17	21309
18	18680
19	16554
20	14857
21	13420
22	12376
23	11584
24	10974
25	10164
26	9535
27	9341
28	9058
29	8301
30	7737
31	7436
32	6949
33	6505
34	5885
35	5635
36	5118
37	5164
38	4997
39	4648
40	4358
41	4132
42	3858
43	3697
44	3629
45	3532
46	3300
47	3156
48	2950
49	2863
50	2870
51	2717
52	2554
53	2577
54	2486
55	2370
56	2341
57	2303
58	2286
59	2178
60	2209
61	1940
62	1971
63	1984
64	1991
65	1736
66	1754
67	1701
68	1828
69	1698
70	1713
71	1676
72	1590
73	1563
74	1487
75	1461
76	1479
77	1476
78	1447
79	1454
80	1385
81	1297
82	1360
83	1242
84	1300
85	1268
86	1324
87	1275
88	1258
89	1271
90	1249
91	1315
92	1239
93	1180
94	1170
95	1161
96	1192
97	1117
98	1154
99	1168
100	1249
101	1127
102	1149
103	1103
104	1034
105	1012
106	1008
107	987
108	1018
109	939
110	968
111	932
112	966
113	908
114	903
115	942
116	906
117	865
118	946
119	953
120	980
121	980
122	966
123	926
124	1023
125	991
126	1024
127	975
128	977
129	1026
130	974
131	991
132	988
133	1125
134	1035
135	976
136	987
137	981
138	972
139	856
140	898
141	898
142	869
143	872
144	845
145	864
146	802
147	784
148	786
149	807
150	773
151	752
152	781
153	810
154	706
155	702
156	718
157	697
158	675
159	684
160	681
161	663
162	657
163	661
164	697
165	691
166	661
167	566
168	629
169	632
170	569
171	597
172	596
173	569
174	541
175	579
176	577
177	584
178	645
179	592
180	621
181	580
182	594
183	599
184	573
185	550
186	587
187	552
188	523
189	516
190	508
191	537
192	510
193	527
194	547
195	523
196	467
197	472
198	467
199	453
200	464
201	423
202	463
203	450
204	436
205	446
206	428
207	469
208	412
209	429
210	435
211	417
212	423
213	441
214	436
215	426
216	414
217	438
218	420
219	418
220	414
221	389
222	406
223	402
224	390
225	418
226	411
227	407
228	383
229	372
230	360
231	350
232	380
233	385
234	361
235	337
236	357
237	337
238	336
239	319
240	322
241	307
242	333
243	333
244	326
245	309
246	276
247	278
248	272
249	266
250	63750