#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_D04.hs38DH/LP6005441-DNA_D04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_D04.hs38DH/QCmetrics/LP6005441-DNA_D04.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.3343	16.933	0	0	0	0.053744	0.0050136	0.05022	0.028922	0.37364	0.51154	0.14252	0.06458	0.035778	0.024343	0.018924	0.015884	0.013934	0.011402	0.0098951	0.0089194	0.0081488	0.0075088	0.0069668	0.0064873	0.10307	0	

coverage	high_quality_coverage_count	
0	20267750
1	812816
2	450804
3	326317
4	252228
5	199476
6	158463
7	130030
8	105063
9	87740
10	72774
11	61961
12	52494
13	44475
14	38575
15	33521
16	28695
17	24987
18	21542
19	19361
20	17244
21	15751
22	13999
23	12856
24	12003
25	10795
26	9887
27	9165
28	8534
29	7710
30	7309
31	6967
32	6604
33	6480
34	6237
35	5681
36	5544
37	5350
38	4986
39	4681
40	4345
41	4227
42	3968
43	3683
44	3551
45	3428
46	3310
47	3203
48	3028
49	2872
50	2799
51	2495
52	2507
53	2407
54	2287
55	2154
56	2177
57	2065
58	2084
59	2089
60	1957
61	2044
62	1882
63	1766
64	1887
65	1790
66	1807
67	1776
68	1635
69	1668
70	1675
71	1566
72	1580
73	1544
74	1510
75	1484
76	1431
77	1427
78	1427
79	1485
80	1369
81	1379
82	1335
83	1237
84	1314
85	1302
86	1237
87	1279
88	1190
89	1169
90	1192
91	1240
92	1143
93	1141
94	1194
95	1138
96	1037
97	1099
98	1087
99	1062
100	1027
101	1034
102	998
103	996
104	880
105	913
106	955
107	939
108	979
109	977
110	899
111	948
112	921
113	967
114	959
115	985
116	960
117	970
118	979
119	1000
120	1001
121	1012
122	1024
123	1017
124	957
125	1042
126	997
127	1061
128	994
129	988
130	973
131	932
132	934
133	893
134	913
135	934
136	919
137	892
138	901
139	894
140	917
141	892
142	863
143	877
144	878
145	881
146	882
147	902
148	866
149	796
150	795
151	764
152	739
153	706
154	771
155	736
156	706
157	710
158	750
159	706
160	730
161	670
162	668
163	635
164	640
165	675
166	654
167	631
168	609
169	624
170	569
171	645
172	611
173	605
174	627
175	568
176	564
177	504
178	554
179	530
180	549
181	554
182	494
183	516
184	506
185	455
186	513
187	540
188	508
189	481
190	453
191	460
192	465
193	500
194	442
195	459
196	447
197	452
198	480
199	509
200	463
201	445
202	420
203	477
204	488
205	489
206	437
207	457
208	456
209	446
210	465
211	442
212	435
213	436
214	436
215	401
216	439
217	401
218	381
219	358
220	385
221	384
222	348
223	401
224	376
225	353
226	310
227	305
228	304
229	333
230	313
231	294
232	274
233	313
234	275
235	290
236	305
237	281
238	238
239	280
240	245
241	267
242	259
243	230
244	250
245	240
246	228
247	237
248	219
249	212
250	59018