#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_D06.hs38DH/LP6005441-DNA_D06.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_D06.hs38DH/QCmetrics/LP6005441-DNA_D06.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.577	18.074	0	0	0	0.062355	0.0046906	0.039578	0.027851	0.38964	0.52412	0.14708	0.068509	0.03939	0.02706	0.021133	0.017818	0.015592	0.012746	0.010972	0.0097756	0.0089242	0.0082316	0.0076306	0.007123	0.108	0	

coverage	high_quality_coverage_count	
0	20159810
1	842714
2	446794
3	320137
4	247607
5	194939
6	159165
7	131955
8	109883
9	92315
10	76783
11	65652
12	57023
13	49336
14	42653
15	36917
16	31074
17	27487
18	23730
19	20880
20	18836
21	16835
22	15580
23	14231
24	12861
25	11647
26	11323
27	10675
28	9844
29	9123
30	8577
31	7810
32	7367
33	7106
34	6821
35	6489
36	6246
37	5899
38	5552
39	5399
40	5117
41	4856
42	4725
43	4476
44	4395
45	4048
46	3977
47	3556
48	3478
49	3323
50	3380
51	3268
52	3112
53	2990
54	2887
55	2828
56	2648
57	2441
58	2377
59	2338
60	2277
61	2154
62	2098
63	2115
64	1999
65	2038
66	1897
67	1862
68	1849
69	1836
70	1689
71	1767
72	1670
73	1686
74	1716
75	1604
76	1510
77	1568
78	1580
79	1581
80	1489
81	1422
82	1472
83	1455
84	1348
85	1330
86	1412
87	1415
88	1431
89	1430
90	1321
91	1286
92	1322
93	1249
94	1213
95	1180
96	1163
97	1113
98	1073
99	1079
100	1065
101	1024
102	1013
103	970
104	1051
105	1014
106	1052
107	1085
108	997
109	969
110	942
111	994
112	845
113	960
114	910
115	955
116	918
117	903
118	842
119	903
120	885
121	854
122	856
123	870
124	808
125	818
126	884
127	801
128	788
129	831
130	778
131	801
132	738
133	803
134	813
135	783
136	853
137	843
138	876
139	827
140	769
141	767
142	749
143	730
144	759
145	745
146	742
147	704
148	727
149	712
150	697
151	749
152	738
153	734
154	705
155	744
156	727
157	725
158	751
159	794
160	839
161	797
162	859
163	856
164	782
165	859
166	812
167	792
168	785
169	837
170	790
171	810
172	784
173	752
174	713
175	720
176	746
177	725
178	685
179	650
180	746
181	672
182	683
183	653
184	673
185	655
186	673
187	610
188	599
189	599
190	595
191	608
192	570
193	612
194	584
195	538
196	590
197	547
198	575
199	515
200	586
201	507
202	485
203	477
204	501
205	527
206	485
207	502
208	484
209	495
210	480
211	574
212	511
213	492
214	535
215	512
216	469
217	471
218	495
219	485
220	455
221	471
222	467
223	483
224	453
225	468
226	455
227	477
228	486
229	438
230	388
231	435
232	387
233	364
234	414
235	374
236	372
237	393
238	364
239	367
240	336
241	330
242	346
243	350
244	303
245	329
246	337
247	372
248	323
249	314
250	67857