#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_D09.hs38DH/LP6005441-DNA_D09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_D09.hs38DH/QCmetrics/LP6005441-DNA_D09.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 36.706 11.24 36 5 0 0.01939 0.0010882 0.04877 0.0040609 0.012184 0.085494 0.99889 0.99697 0.99437 0.98984 0.97781 0.93713 0.81906 0.33699 0.050771 0.0093586 0.0056576 0.0042343 0.0033367 0.0027265 0.99784 27 coverage high_quality_coverage_count 0 3041933 1 1462359 2 1302598 3 1263241 4 1259271 5 1281905 6 1325668 7 1395046 8 1497642 9 1634997 10 1817461 11 2063698 12 2396069 13 2817553 14 3369583 15 4071641 16 4992251 17 6205360 18 7817914 19 9955101 20 12777833 21 16443104 22 21163168 23 27078318 24 34319882 25 42924868 26 52892125 27 64018073 28 76040308 29 88586719 30 101161136 31 113178038 32 124014907 33 133206449 34 140186787 35 144696004 36 146387341 37 145261892 38 141446532 39 135186394 40 126909093 41 117040336 42 106092571 43 94526898 44 82879977 45 71495327 46 60733677 47 50820907 48 41913948 49 34094985 50 27380478 51 21708576 52 17022433 53 13214303 54 10171146 55 7782738 56 5928575 57 4513114 58 3436065 59 2641928 60 2051402 61 1622632 62 1306711 63 1075641 64 909623 65 786706 66 694626 67 625263 68 569909 69 527795 70 491118 71 462664 72 437658 73 416296 74 395245 75 375091 76 357959 77 340419 78 324717 79 309921 80 296144 81 284173 82 272166 83 260539 84 249422 85 238807 86 230703 87 220369 88 211054 89 203190 90 195460 91 187824 92 180714 93 174417 94 168253 95 164409 96 159023 97 153411 98 149086 99 144310 100 139610 101 136013 102 131198 103 127916 104 124055 105 120383 106 117078 107 113772 108 110073 109 107401 110 104351 111 101231 112 98000 113 95773 114 93433 115 89889 116 88307 117 85161 118 82702 119 80531 120 78284 121 75941 122 74109 123 71870 124 69897 125 67772 126 65921 127 64585 128 63098 129 61707 130 60127 131 58525 132 57091 133 55637 134 54408 135 53335 136 52106 137 51238 138 50109 139 49628 140 48878 141 47455 142 46715 143 45605 144 44720 145 43459 146 42928 147 42190 148 41697 149 40531 150 39946 151 39733 152 39055 153 38170 154 36837 155 36161 156 35759 157 34887 158 34289 159 33486 160 33067 161 32850 162 31989 163 31124 164 30770 165 30329 166 29959 167 29673 168 28641 169 28508 170 28289 171 27702 172 27178 173 26850 174 26601 175 26088 176 25402 177 25004 178 24803 179 24305 180 24000 181 23594 182 23325 183 22966 184 22610 185 22209 186 21604 187 21315 188 21155 189 20690 190 20564 191 19772 192 19663 193 19429 194 19028 195 18815 196 18489 197 18284 198 17942 199 17936 200 17305 201 16913 202 17032 203 16654 204 16374 205 16031 206 15848 207 16082 208 15505 209 15328 210 15149 211 14944 212 14495 213 14356 214 14133 215 13956 216 13798 217 13612 218 13532 219 13348 220 12988 221 13042 222 12997 223 12627 224 12647 225 12415 226 12412 227 12381 228 11991 229 11895 230 11584 231 11446 232 11500 233 11354 234 11102 235 10995 236 11032 237 10834 238 10695 239 10630 240 10414 241 10347 242 9843 243 9780 244 9741 245 9334 246 9556 247 9352 248 9291 249 9049 250 1677313