#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_D09.hs38DH/LP6005441-DNA_D09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_D09.hs38DH/QCmetrics/LP6005441-DNA_D09.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.3461	17.361	0	0	0	0.05163	0.0039611	0.04325	0.027193	0.37754	0.50357	0.14073	0.062599	0.034202	0.023275	0.018395	0.015642	0.013798	0.01142	0.0099329	0.008898	0.008102	0.0075002	0.0069963	0.0065722	0.10098	0	

coverage	high_quality_coverage_count	
0	20309976
1	817856
2	458942
3	321441
4	248531
5	196703
6	156937
7	127054
8	104432
9	86068
10	72116
11	59628
12	49294
13	41812
14	35434
15	29801
16	25050
17	22627
18	20203
19	17652
20	15587
21	13786
22	13012
23	11905
24	10780
25	9982
26	9455
27	8657
28	8006
29	7502
30	7102
31	7000
32	6472
33	6236
34	5729
35	5446
36	4955
37	4696
38	4310
39	4255
40	4186
41	4007
42	3800
43	3716
44	3475
45	3497
46	3195
47	3059
48	3163
49	3050
50	2987
51	2876
52	2841
53	2457
54	2373
55	2366
56	2162
57	2201
58	2104
59	2094
60	2026
61	1959
62	1984
63	2026
64	2015
65	1912
66	1848
67	1796
68	1681
69	1567
70	1508
71	1514
72	1453
73	1389
74	1462
75	1481
76	1473
77	1297
78	1386
79	1261
80	1266
81	1273
82	1217
83	1163
84	1203
85	1197
86	1191
87	1210
88	1138
89	1054
90	1086
91	996
92	1014
93	1040
94	1001
95	985
96	951
97	1018
98	1015
99	916
100	907
101	869
102	845
103	901
104	932
105	874
106	915
107	895
108	812
109	887
110	808
111	781
112	786
113	858
114	826
115	794
116	837
117	814
118	841
119	799
120	766
121	750
122	748
123	745
124	815
125	770
126	744
127	774
128	745
129	778
130	742
131	739
132	713
133	763
134	758
135	751
136	765
137	754
138	779
139	737
140	709
141	679
142	667
143	713
144	667
145	766
146	699
147	765
148	697
149	722
150	721
151	723
152	714
153	741
154	689
155	698
156	702
157	686
158	685
159	654
160	675
161	650
162	678
163	682
164	683
165	661
166	745
167	728
168	764
169	690
170	765
171	774
172	726
173	752
174	710
175	737
176	711
177	680
178	694
179	715
180	727
181	688
182	661
183	658
184	671
185	621
186	618
187	598
188	615
189	601
190	581
191	630
192	592
193	563
194	595
195	569
196	604
197	578
198	517
199	497
200	446
201	468
202	462
203	446
204	487
205	426
206	399
207	473
208	430
209	419
210	406
211	438
212	385
213	366
214	380
215	372
216	366
217	397
218	370
219	382
220	406
221	414
222	434
223	446
224	451
225	404
226	411
227	400
228	391
229	378
230	380
231	367
232	398
233	378
234	377
235	347
236	361
237	395
238	384
239	308
240	328
241	323
242	354
243	312
244	292
245	318
246	296
247	312
248	298
249	305
250	63440