#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005441-DNA_F01.hs38DH/LP6005441-DNA_F01.hs38DH.cram --algo AlignmentStat SGDP/LP6005441-DNA_F01.hs38DH/QCmetrics/LP6005441-DNA_F01.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	625320672	625320672	1.000000	0	617917450	0.988161	61306426851	575422192	57241616091	55109889469	0.000000	0.003997	0.003414	0.000228	100.000000	615215052	0.995627	0	0.500121	0.020768	0.000022	
SECOND_OF_PAIR	625320672	625320672	1.000000	0	615870896	0.984888	60908850647	572815453	56853878376	53776137280	0.000000	0.004658	0.004064	0.000227	100.000000	615215052	0.998935	0	0.500037	0.021186	0.000910	
PAIR	1250641344	1250641344	1.000000	0	1233788346	0.986525	122215277498	1148237645	114095494467	108886026749	0.000000	0.004327	0.003738	0.000227	100.000000	1230430104	0.997278	0	0.500079	0.020976	0.000466