#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005441-DNA_F01.hs38DH/LP6005441-DNA_F01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F01.hs38DH/QCmetrics/LP6005441-DNA_F01.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 19.289 5.7922 19 3 0 0.013665 0.0020663 0.041396 0.0060195 0.00016107 0.063308 0.99753 0.99064 0.97035 0.83364 0.47171 0.14619 0.028082 0.0030212 0.0012258 0.00065771 0.0004332 0.0003189 0.00024336 0.00019184 0.99253 21 coverage high_quality_coverage_count 0 376273 1 264806 2 251705 3 258675 4 271899 5 303166 6 372441 7 506980 8 748585 9 1155593 10 1788164 11 2702141 12 3906302 13 5378824 14 7020628 15 8702034 16 10240314 17 11459312 18 12216417 19 12435994 20 12107798 21 11300523 22 10126707 23 8731581 24 7250052 25 5811367 26 4510914 27 3395217 28 2479307 29 1769016 30 1233126 31 843707 32 569018 33 382621 34 258921 35 177782 36 126244 37 92782 38 71213 39 56618 40 46931 41 40010 42 34754 43 30210 44 26319 45 23466 46 21152 47 18859 48 16689 49 14720 50 13205 51 12045 52 10769 53 9759 54 8594 55 7854 56 7078 57 6456 58 5684 59 4973 60 4597 61 4225 62 3943 63 3767 64 3555 65 3159 66 3075 67 2749 68 2658 69 2423 70 2312 71 1980 72 1926 73 1653 74 1769 75 1706 76 1590 77 1563 78 1487 79 1401 80 1267 81 1282 82 1174 83 1210 84 1172 85 1147 86 1086 87 1082 88 1071 89 1000 90 905 91 878 92 857 93 755 94 810 95 807 96 750 97 714 98 697 99 663 100 659 101 593 102 616 103 616 104 601 105 646 106 600 107 528 108 506 109 570 110 544 111 526 112 539 113 469 114 539 115 539 116 579 117 576 118 552 119 559 120 554 121 548 122 516 123 506 124 510 125 433 126 403 127 435 128 414 129 433 130 384 131 390 132 374 133 336 134 318 135 281 136 294 137 314 138 251 139 282 140 272 141 261 142 216 143 252 144 217 145 217 146 213 147 185 148 195 149 173 150 172 151 141 152 164 153 153 154 138 155 129 156 122 157 129 158 92 159 105 160 99 161 118 162 124 163 90 164 97 165 104 166 79 167 97 168 83 169 83 170 81 171 97 172 84 173 77 174 61 175 92 176 69 177 72 178 69 179 70 180 71 181 59 182 60 183 57 184 47 185 51 186 47 187 42 188 31 189 48 190 55 191 49 192 55 193 48 194 56 195 58 196 51 197 41 198 42 199 46 200 49 201 46 202 47 203 41 204 42 205 41 206 36 207 59 208 46 209 43 210 41 211 44 212 48 213 43 214 38 215 46 216 42 217 42 218 33 219 32 220 44 221 36 222 29 223 32 224 28 225 27 226 26 227 36 228 26 229 20 230 27 231 23 232 25 233 20 234 29 235 24 236 26 237 31 238 39 239 23 240 29 241 27 242 34 243 35 244 32 245 27 246 35 247 22 248 21 249 17 250 1834