#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_F01.hs38DH/LP6005441-DNA_F01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F01.hs38DH/QCmetrics/LP6005441-DNA_F01.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 23.899 26.676 19 4 0 0.049288 0.0016394 0.035929 0.0091057 0.29533 0.39129 0.99701 0.99355 0.97609 0.84441 0.49931 0.19141 0.07616 0.044415 0.038379 0.034601 0.031156 0.027675 0.023888 0.020085 0.99373 22 coverage high_quality_coverage_count 0 70757 1 22353 2 18516 3 19121 4 21691 5 29677 6 42526 7 66488 8 105319 9 168717 10 263472 11 403158 12 585165 13 809011 14 1051704 15 1296400 16 1523865 17 1698656 18 1804435 19 1833410 20 1780850 21 1658247 22 1484735 23 1284335 24 1069524 25 864260 26 676119 27 516211 28 384707 29 282785 30 204215 31 146637 32 105251 33 77213 34 58536 35 45594 36 36322 37 29404 38 25219 39 21941 40 19405 41 17614 42 16274 43 15204 44 14297 45 13488 46 12626 47 11826 48 11115 49 10822 50 9822 51 9779 52 9421 53 9058 54 8986 55 8783 56 8659 57 8519 58 8122 59 8146 60 8235 61 8202 62 8234 63 8301 64 8101 65 7943 66 8045 67 8143 68 8047 69 8177 70 8113 71 7973 72 8118 73 8094 74 7966 75 8373 76 8352 77 8368 78 8469 79 8449 80 8530 81 8654 82 8825 83 8829 84 9010 85 9115 86 9151 87 9126 88 9088 89 9192 90 9173 91 9190 92 9199 93 9338 94 9316 95 9191 96 8846 97 8679 98 8529 99 8429 100 8522 101 8158 102 7827 103 7700 104 7481 105 7281 106 7077 107 6714 108 6743 109 6419 110 6121 111 5939 112 5527 113 5186 114 5133 115 4636 116 4444 117 4361 118 4162 119 3958 120 3757 121 3548 122 3321 123 3184 124 3088 125 2944 126 2860 127 2705 128 2533 129 2340 130 2212 131 2228 132 2037 133 1988 134 1942 135 1831 136 1747 137 1735 138 1634 139 1569 140 1498 141 1489 142 1439 143 1524 144 1382 145 1376 146 1289 147 1282 148 1306 149 1242 150 1222 151 1250 152 1268 153 1190 154 1208 155 1159 156 1129 157 1169 158 1139 159 1081 160 1148 161 1089 162 1088 163 1087 164 1124 165 1041 166 1058 167 1084 168 1123 169 1096 170 1084 171 1004 172 1013 173 1012 174 1015 175 1033 176 1043 177 975 178 935 179 966 180 982 181 1017 182 972 183 979 184 1002 185 1002 186 927 187 1022 188 997 189 986 190 971 191 1080 192 994 193 1025 194 963 195 917 196 953 197 931 198 876 199 894 200 875 201 880 202 827 203 820 204 876 205 808 206 797 207 809 208 837 209 804 210 766 211 784 212 763 213 744 214 748 215 804 216 755 217 799 218 789 219 764 220 802 221 763 222 708 223 728 224 720 225 733 226 779 227 714 228 727 229 700 230 712 231 735 232 710 233 597 234 680 235 661 236 644 237 602 238 665 239 608 240 622 241 579 242 558 243 569 244 579 245 534 246 536 247 597 248 522 249 507 250 200348