#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005441-DNA_F02.hs38DH/LP6005441-DNA_F02.hs38DH.cram --algo AlignmentStat SGDP/LP6005441-DNA_F02.hs38DH/QCmetrics/LP6005441-DNA_F02.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	634007695	634007695	1.000000	0	629487309	0.992870	62494841011	591008360	58795772917	56802591577	0.000000	0.003373	0.002946	0.000201	100.000000	626863974	0.995833	0	0.500119	0.019132	0.000011	
SECOND_OF_PAIR	634007695	634007695	1.000000	0	627485964	0.989713	62097850164	588175536	58394356036	55684785957	0.000000	0.004048	0.003608	0.000200	100.000000	626863974	0.999009	0	0.500013	0.019583	0.000798	
PAIR	1268015390	1268015390	1.000000	0	1256973273	0.991292	124592691175	1179183896	117190128953	112487377534	0.000000	0.003710	0.003276	0.000200	100.000000	1253727948	0.997418	0	0.500066	0.019357	0.000405