#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_F03.hs38DH/LP6005441-DNA_F03.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F03.hs38DH/QCmetrics/LP6005441-DNA_F03.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.5458	18.475	0	0	0	0.063026	0.004092	0.041119	0.028637	0.41675	0.55362	0.14635	0.065442	0.036157	0.024552	0.019304	0.016348	0.014419	0.012041	0.010631	0.0097038	0.0089731	0.0083718	0.0078563	0.0074057	0.10585	0	

coverage	high_quality_coverage_count	
0	20177145
1	882131
2	451132
3	329591
4	249538
5	196979
6	161680
7	131803
8	111270
9	90467
10	75690
11	62490
12	53323
13	44925
14	37868
15	31913
16	27326
17	24181
18	21487
19	19145
20	17193
21	15131
22	13609
23	12373
24	11558
25	10298
26	10131
27	9107
28	8496
29	7556
30	7120
31	6686
32	6138
33	5880
34	5565
35	5501
36	5303
37	4995
38	4617
39	4398
40	4133
41	3778
42	3714
43	3696
44	3346
45	3262
46	3185
47	2853
48	2787
49	2589
50	2455
51	2514
52	2225
53	2214
54	2159
55	2149
56	2165
57	2030
58	1973
59	2027
60	1930
61	1834
62	1720
63	1793
64	1764
65	1717
66	1642
67	1716
68	1607
69	1548
70	1541
71	1619
72	1560
73	1507
74	1400
75	1428
76	1350
77	1292
78	1288
79	1226
80	1299
81	1300
82	1231
83	1250
84	1260
85	1250
86	1219
87	1132
88	1069
89	1176
90	1091
91	1056
92	1035
93	1076
94	1111
95	1085
96	1068
97	1067
98	1042
99	1019
100	981
101	1003
102	1002
103	929
104	977
105	1010
106	942
107	938
108	916
109	934
110	925
111	942
112	970
113	898
114	951
115	953
116	904
117	895
118	933
119	881
120	896
121	907
122	866
123	875
124	916
125	917
126	886
127	847
128	892
129	848
130	819
131	858
132	765
133	787
134	833
135	817
136	803
137	782
138	777
139	832
140	850
141	820
142	840
143	820
144	843
145	802
146	793
147	824
148	817
149	824
150	781
151	817
152	822
153	859
154	771
155	751
156	760
157	775
158	760
159	760
160	780
161	758
162	761
163	762
164	769
165	743
166	793
167	757
168	753
169	767
170	765
171	744
172	718
173	698
174	768
175	730
176	690
177	688
178	670
179	656
180	626
181	667
182	619
183	622
184	587
185	612
186	613
187	558
188	577
189	536
190	551
191	533
192	558
193	549
194	507
195	513
196	532
197	479
198	450
199	532
200	465
201	446
202	448
203	483
204	451
205	416
206	470
207	487
208	445
209	437
210	407
211	423
212	435
213	434
214	419
215	395
216	429
217	425
218	397
219	389
220	423
221	433
222	374
223	390
224	395
225	402
226	401
227	431
228	399
229	416
230	403
231	438
232	405
233	450
234	391
235	403
236	417
237	424
238	397
239	407
240	392
241	398
242	361
243	408
244	391
245	385
246	329
247	365
248	397
249	383
250	76448