#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005441-DNA_F04.hs38DH/LP6005441-DNA_F04.hs38DH.cram --algo AlignmentStat SGDP/LP6005441-DNA_F04.hs38DH/QCmetrics/LP6005441-DNA_F04.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	703826968	703826968	1.000000	0	695655089	0.988389	69122689191	654950806	65196450913	62993254762	0.000000	0.003312	0.002912	0.000194	100.000000	693484041	0.996879	0	0.500114	0.014536	0.000051	
SECOND_OF_PAIR	703826968	703826968	1.000000	0	693979625	0.986009	68704851305	652618245	64783641459	61318225737	0.000000	0.004352	0.003943	0.000194	100.000000	693484041	0.999286	0	0.499984	0.014950	0.004291	
PAIR	1407653936	1407653936	1.000000	0	1389634714	0.987199	137827540496	1307569051	129980092372	124311480499	0.000000	0.003831	0.003426	0.000194	100.000000	1386968082	0.998081	0	0.500049	0.014743	0.002171