#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_F04.hs38DH/LP6005441-DNA_F04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F04.hs38DH/QCmetrics/LP6005441-DNA_F04.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 42.555 12.191 42 5 0 0.031317 0.0012168 0.04172 0.0063895 0.011891 0.092534 0.99853 0.99644 0.99414 0.99109 0.98545 0.97207 0.93292 0.63372 0.19001 0.027265 0.0081895 0.0056888 0.0044116 0.0035426 0.99744 26 coverage high_quality_coverage_count 0 4043559 1 1733497 2 1433764 3 1305242 4 1262864 5 1242283 6 1226610 7 1244161 8 1280563 9 1333226 10 1402158 11 1501318 12 1634029 13 1805529 14 2022058 15 2289491 16 2614495 17 3016768 18 3497354 19 4096577 20 4843502 21 5784344 22 7000736 23 8560183 24 10580511 25 13166421 26 16450850 27 20564779 28 25635796 29 31756262 30 38956411 31 47218033 32 56429434 33 66454130 34 77010615 35 87784332 36 98290005 37 108249027 38 117150428 39 124642702 40 130331034 41 133961066 42 135398176 43 134604783 44 131593632 45 126598344 46 119849401 47 111707868 48 102524368 49 92752305 50 82642059 51 72589581 52 62867758 53 53725915 54 45273307 55 37683840 56 30971242 57 25167352 58 20210012 59 16077044 60 12669716 61 9905224 62 7696683 63 5954645 64 4596143 65 3554955 66 2763038 67 2168558 68 1719900 69 1388943 70 1143048 71 963740 72 827455 73 726744 74 648198 75 588412 76 542927 77 506531 78 475540 79 449128 80 425231 81 405462 82 386333 83 369051 84 354299 85 338871 86 325562 87 313859 88 300702 89 290443 90 279191 91 269980 92 259167 93 249869 94 241025 95 233073 96 224636 97 218055 98 209562 99 203394 100 196095 101 190073 102 183478 103 177059 104 171665 105 166611 106 161033 107 155577 108 149894 109 146323 110 142017 111 137612 112 133048 113 129388 114 125088 115 121164 116 117396 117 114488 118 110037 119 107131 120 104801 121 101285 122 98273 123 96302 124 93221 125 91286 126 88351 127 86638 128 84308 129 82653 130 80380 131 78352 132 76195 133 74759 134 73317 135 71341 136 69919 137 68297 138 66891 139 65155 140 63467 141 62459 142 60486 143 59669 144 58176 145 57334 146 56113 147 55244 148 54169 149 53070 150 52074 151 50977 152 49956 153 49551 154 48507 155 47384 156 46374 157 45855 158 44656 159 43861 160 43118 161 42660 162 42013 163 40806 164 40021 165 39407 166 38749 167 37914 168 37209 169 36534 170 35951 171 35311 172 34867 173 34559 174 33777 175 33372 176 32767 177 32464 178 31635 179 31265 180 30888 181 30470 182 29907 183 29211 184 28717 185 28374 186 27923 187 27182 188 26930 189 26618 190 26022 191 25415 192 25111 193 24947 194 24434 195 24142 196 24057 197 23386 198 23306 199 22843 200 22682 201 22094 202 21865 203 21680 204 20837 205 21090 206 20984 207 20445 208 20535 209 19747 210 20051 211 19690 212 19403 213 19310 214 18977 215 18622 216 18270 217 18242 218 17838 219 17407 220 17523 221 17162 222 17023 223 16706 224 16594 225 16355 226 16112 227 16034 228 15568 229 15400 230 15289 231 15175 232 14851 233 14600 234 14575 235 14211 236 14339 237 13898 238 13514 239 13558 240 13260 241 13318 242 13037 243 12936 244 12678 245 12394 246 12416 247 12079 248 12116 249 11732 250 1990170