#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_F04.hs38DH/LP6005441-DNA_F04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F04.hs38DH/QCmetrics/LP6005441-DNA_F04.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.6013	18.083	0	0	0	0.057976	0.0039861	0.040488	0.025545	0.36761	0.4956	0.14772	0.071471	0.041005	0.027913	0.021357	0.017865	0.015592	0.012601	0.010773	0.0096055	0.0087738	0.0080933	0.007537	0.0070672	0.10941	1	

coverage	high_quality_coverage_count	
0	20144839
1	789099
2	447395
3	319019
4	246679
5	201482
6	167352
7	137403
8	116895
9	96972
10	84179
11	70274
12	59149
13	51397
14	44461
15	39045
16	34801
17	30687
18	27337
19	23096
20	19717
21	17821
22	16343
23	14905
24	13750
25	12309
26	11246
27	10656
28	10192
29	9310
30	8730
31	8300
32	8155
33	7608
34	7260
35	6851
36	6541
37	6123
38	5692
39	5440
40	5313
41	5094
42	4934
43	4722
44	4388
45	4136
46	3913
47	3785
48	3573
49	3349
50	3178
51	3269
52	3061
53	2890
54	2730
55	2628
56	2721
57	2469
58	2356
59	2297
60	2202
61	2154
62	2071
63	2055
64	1977
65	1921
66	1831
67	1787
68	1872
69	1788
70	1714
71	1743
72	1634
73	1643
74	1545
75	1668
76	1621
77	1541
78	1514
79	1461
80	1410
81	1397
82	1459
83	1396
84	1352
85	1294
86	1242
87	1302
88	1135
89	1163
90	1194
91	1184
92	1172
93	1179
94	1126
95	1101
96	1114
97	1028
98	955
99	1051
100	998
101	989
102	955
103	1067
104	1072
105	968
106	963
107	999
108	923
109	964
110	908
111	908
112	916
113	918
114	843
115	857
116	879
117	812
118	818
119	843
120	838
121	865
122	819
123	780
124	842
125	814
126	824
127	836
128	770
129	795
130	800
131	836
132	822
133	764
134	750
135	765
136	781
137	733
138	708
139	821
140	756
141	780
142	753
143	753
144	739
145	720
146	784
147	703
148	716
149	703
150	722
151	708
152	726
153	723
154	671
155	681
156	698
157	702
158	726
159	703
160	690
161	705
162	698
163	696
164	691
165	711
166	747
167	692
168	695
169	684
170	732
171	659
172	687
173	719
174	673
175	674
176	715
177	765
178	768
179	759
180	763
181	696
182	754
183	687
184	723
185	699
186	658
187	677
188	603
189	610
190	648
191	604
192	571
193	575
194	605
195	593
196	557
197	521
198	532
199	533
200	540
201	527
202	490
203	516
204	550
205	566
206	557
207	549
208	536
209	539
210	546
211	553
212	547
213	519
214	517
215	535
216	541
217	574
218	487
219	534
220	509
221	536
222	517
223	490
224	509
225	494
226	455
227	475
228	489
229	464
230	503
231	464
232	474
233	461
234	459
235	458
236	419
237	426
238	400
239	402
240	381
241	378
242	374
243	323
244	366
245	347
246	390
247	335
248	364
249	349
250	67510