#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005441-DNA_F05.hs38DH/LP6005441-DNA_F05.hs38DH.cram --algo AlignmentStat SGDP/LP6005441-DNA_F05.hs38DH/QCmetrics/LP6005441-DNA_F05.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	972645571	972645571	1.000000	0	962603881	0.989676	95530136904	901439380	89648148935	85543554994	0.000000	0.004381	0.003895	0.000194	100.000000	959426450	0.996699	0	0.500104	0.017545	0.000011	
SECOND_OF_PAIR	972645571	972645571	1.000000	0	959880212	0.986876	95012870550	898206367	89144643717	83828383533	0.000000	0.005119	0.004630	0.000193	100.000000	959426450	0.999527	0	0.499952	0.017799	0.000668	
PAIR	1945291142	1945291142	1.000000	0	1922484093	0.988276	190543007454	1799645747	178792792652	169371938527	0.000000	0.004749	0.004261	0.000193	100.000000	1918852900	0.998111	0	0.500028	0.017672	0.000340