#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_F05.hs38DH/LP6005441-DNA_F05.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F05.hs38DH/QCmetrics/LP6005441-DNA_F05.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 59.51 14.647 59 7 0 0.02786 0.0011496 0.050445 0.0055429 0.013284 0.098281 0.99903 0.99762 0.99607 0.99437 0.99228 0.98933 0.98466 0.96038 0.83939 0.49459 0.1502 0.02819 0.0098612 0.0071055 0.99829 28 coverage high_quality_coverage_count 0 2669541 1 1165931 2 952728 3 887783 4 858035 5 853125 6 848206 7 849063 8 856334 9 869578 10 883881 11 904445 12 930616 13 959921 14 992498 15 1032737 16 1081401 17 1138205 18 1202403 19 1279516 20 1372503 21 1482380 22 1606092 23 1745750 24 1903682 25 2085776 26 2297814 27 2533229 28 2802951 29 3104000 30 3459141 31 3866693 32 4332954 33 4896652 34 5573379 35 6389062 36 7403343 37 8641559 38 10153209 39 12009932 40 14266365 41 16971849 42 20206098 43 24000146 44 28396552 45 33402420 46 39017676 47 45225956 48 51930460 49 59058684 50 66470158 51 73956473 52 81353899 53 88470726 54 95034937 55 100869747 56 105829392 57 109676407 58 112275317 59 113572783 60 113522714 61 112095559 62 109386854 63 105497340 64 100554044 65 94745733 66 88271251 67 81334354 68 74121328 69 66816520 70 59576724 71 52570130 72 45904607 73 39697860 74 33981781 75 28820710 76 24222642 77 20181885 78 16668607 79 13666998 80 11124798 81 8998641 82 7239612 83 5801357 84 4638654 85 3711182 86 2966670 87 2383116 88 1928159 89 1575353 90 1300872 91 1092476 92 930765 93 809061 94 711839 95 638770 96 583081 97 535624 98 498845 99 471244 100 445922 101 425274 102 406658 103 388956 104 376460 105 361947 106 349233 107 338309 108 327570 109 318201 110 309341 111 301649 112 293096 113 284314 114 276724 115 269918 116 262146 117 255752 118 247961 119 241602 120 233887 121 228007 122 221013 123 214157 124 208943 125 203500 126 196584 127 189910 128 184836 129 179059 130 173125 131 168561 132 163063 133 157572 134 152166 135 147506 136 143642 137 139187 138 135943 139 131707 140 128055 141 124300 142 120498 143 116891 144 113229 145 110607 146 107406 147 105111 148 103007 149 100595 150 97787 151 95999 152 94632 153 92606 154 90732 155 89515 156 87573 157 86406 158 85366 159 83904 160 82685 161 81328 162 79914 163 78609 164 77284 165 76050 166 75932 167 74235 168 73324 169 71955 170 70981 171 70590 172 69205 173 68180 174 66867 175 66302 176 65090 177 63970 178 62950 179 62365 180 60749 181 60178 182 58712 183 57913 184 56419 185 55291 186 54303 187 53260 188 51974 189 51137 190 49872 191 48810 192 47064 193 46597 194 45579 195 45391 196 43862 197 43528 198 41936 199 41754 200 40465 201 39986 202 39578 203 38532 204 38119 205 37439 206 36719 207 36245 208 35347 209 34722 210 34332 211 33921 212 33115 213 32650 214 31925 215 31544 216 31152 217 30671 218 30365 219 30032 220 29406 221 29014 222 28613 223 28730 224 27718 225 27950 226 27152 227 27186 228 26867 229 26110 230 26100 231 25656 232 25491 233 25164 234 24676 235 24475 236 24010 237 24042 238 23796 239 23359 240 23295 241 22737 242 23005 243 22553 244 22044 245 22017 246 21659 247 21492 248 21630 249 21116 250 3541844