#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_F05.hs38DH/LP6005441-DNA_F05.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F05.hs38DH/QCmetrics/LP6005441-DNA_F05.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 34.993 29.297 30 5 0 0.060782 0.0011778 0.040787 0.007762 0.28781 0.39832 0.99949 0.99833 0.99594 0.98766 0.94762 0.79978 0.52025 0.11224 0.052671 0.044311 0.039618 0.036296 0.033466 0.030804 0.99877 29 coverage high_quality_coverage_count 0 12094 1 6455 2 6305 3 6793 4 7846 5 8191 6 8997 7 10534 8 12810 9 16044 10 20642 11 27100 12 34891 13 47734 14 65123 15 88992 16 124605 17 172684 18 237813 19 322516 20 426930 21 551589 22 686857 23 839099 24 989814 25 1132531 26 1258922 27 1356659 28 1417235 29 1441733 30 1427656 31 1373709 32 1288494 33 1177618 34 1053202 35 918387 36 782813 37 654422 38 535845 39 431686 40 344048 41 267574 42 207528 43 159979 44 122775 45 94242 46 72731 47 57261 48 44820 49 37069 50 31186 51 26861 52 23587 53 20802 54 18754 55 17422 56 16072 57 15222 58 14203 59 13496 60 12951 61 12385 62 12105 63 11416 64 11183 65 10976 66 10668 67 10202 68 9686 69 9353 70 8868 71 8581 72 8199 73 8076 74 7783 75 7749 76 7640 77 7421 78 7071 79 7125 80 6984 81 6918 82 6767 83 6698 84 6658 85 6545 86 6610 87 6615 88 6663 89 6453 90 6451 91 6483 92 6236 93 6166 94 6353 95 6220 96 6167 97 6294 98 6298 99 6236 100 6333 101 6349 102 6389 103 6249 104 6176 105 6161 106 6235 107 6340 108 6469 109 6461 110 6533 111 6607 112 6453 113 6573 114 6477 115 6586 116 6490 117 6490 118 6519 119 6659 120 6485 121 6477 122 6632 123 6642 124 6523 125 6701 126 6625 127 6586 128 6508 129 6669 130 6770 131 6694 132 6733 133 6575 134 6554 135 6409 136 6517 137 6380 138 6187 139 6017 140 5989 141 6000 142 5868 143 5754 144 5632 145 5480 146 5342 147 5301 148 5186 149 4889 150 4741 151 4506 152 4528 153 4267 154 4096 155 3923 156 3795 157 3758 158 3651 159 3427 160 3344 161 3145 162 2942 163 2922 164 2751 165 2737 166 2616 167 2487 168 2498 169 2461 170 2143 171 2173 172 2116 173 2160 174 2078 175 1995 176 1988 177 1987 178 1843 179 1833 180 1626 181 1559 182 1614 183 1517 184 1497 185 1441 186 1371 187 1289 188 1279 189 1244 190 1167 191 1201 192 1180 193 1199 194 1180 195 1099 196 1090 197 1094 198 1059 199 969 200 1052 201 1020 202 1113 203 1041 204 930 205 1006 206 961 207 965 208 909 209 879 210 910 211 932 212 914 213 841 214 929 215 870 216 875 217 873 218 889 219 802 220 858 221 774 222 813 223 798 224 811 225 779 226 779 227 767 228 786 229 794 230 719 231 688 232 701 233 711 234 684 235 685 236 669 237 676 238 680 239 696 240 646 241 675 242 667 243 643 244 642 245 583 246 668 247 639 248 671 249 664 250 258763