#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_F06.hs38DH/LP6005441-DNA_F06.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F06.hs38DH/QCmetrics/LP6005441-DNA_F06.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 32.041 11.277 31 5 0 0.021361 0.0022046 0.041138 0.0068299 0.014532 0.086066 0.99867 0.99651 0.99335 0.98631 0.95856 0.85177 0.61427 0.1292 0.016014 0.0075064 0.0055268 0.004322 0.0035166 0.0029453 0.99747 26 coverage high_quality_coverage_count 0 3664397 1 1658580 2 1446312 3 1400227 4 1417297 5 1461411 6 1543616 7 1678795 8 1866364 9 2128778 10 2478811 11 2949547 12 3604075 13 4522954 14 5811403 15 7654050 16 10261411 17 13905796 18 18897841 19 25528045 20 34035625 21 44550582 22 57031995 23 71217588 24 86602586 25 102571567 26 118225329 27 132638240 28 144926024 29 154286474 30 160160372 31 162315388 32 160615877 33 155367676 34 147001961 35 136155672 36 123515678 37 109866136 38 95841452 39 82116392 40 69078315 41 57118720 42 46454573 43 37221898 44 29385474 45 22886829 46 17638013 47 13441082 48 10164907 49 7647694 50 5735623 51 4311415 52 3268195 53 2498597 54 1949673 55 1554690 56 1269303 57 1064710 58 916737 59 809297 60 725397 61 662091 62 615608 63 576094 64 543556 65 512778 66 485262 67 460940 68 440641 69 417615 70 399437 71 380904 72 365031 73 348925 74 334642 75 321166 76 308472 77 296188 78 284031 79 271825 80 260962 81 250339 82 240418 83 232538 84 225063 85 215232 86 207313 87 201373 88 193721 89 186332 90 180167 91 174061 92 169288 93 163863 94 158425 95 153606 96 148821 97 144764 98 140593 99 136352 100 132448 101 128368 102 124582 103 121510 104 117828 105 115232 106 111555 107 108921 108 106142 109 103308 110 100532 111 97357 112 95398 113 93538 114 91051 115 88626 116 86774 117 84174 118 81674 119 80638 120 78153 121 76756 122 75174 123 72684 124 71587 125 69806 126 69053 127 67576 128 65664 129 64281 130 62744 131 62480 132 61280 133 59824 134 59138 135 58105 136 56987 137 56314 138 54729 139 53992 140 53073 141 51979 142 51292 143 50210 144 48983 145 47862 146 47475 147 46358 148 45373 149 44724 150 44215 151 43413 152 42774 153 41769 154 41113 155 40512 156 39712 157 39258 158 38381 159 37923 160 37453 161 36697 162 35551 163 35268 164 34441 165 34274 166 33573 167 32818 168 32307 169 31649 170 31376 171 30554 172 30553 173 29205 174 29027 175 28009 176 28005 177 27206 178 26927 179 26483 180 25951 181 25712 182 25425 183 25243 184 24776 185 24200 186 23742 187 23676 188 23339 189 23015 190 22805 191 22452 192 22215 193 22066 194 21404 195 21515 196 20986 197 20789 198 20634 199 20359 200 20196 201 19556 202 19448 203 19010 204 18856 205 18582 206 18316 207 18213 208 18301 209 17992 210 17667 211 17481 212 17260 213 17014 214 17011 215 16964 216 16310 217 16286 218 16225 219 15969 220 15731 221 15186 222 14905 223 14965 224 14640 225 14562 226 14530 227 14243 228 13980 229 14056 230 14035 231 13902 232 13804 233 13370 234 13746 235 13430 236 13126 237 12889 238 13019 239 12554 240 12410 241 12335 242 12120 243 11988 244 11762 245 11864 246 11674 247 11446 248 11190 249 11104 250 1984196