#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_F07.hs38DH/LP6005441-DNA_F07.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F07.hs38DH/QCmetrics/LP6005441-DNA_F07.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.3179	16.658	0	0	0	0.048915	0.0040839	0.04019	0.026701	0.38691	0.5068	0.14358	0.066918	0.036556	0.024437	0.018938	0.015946	0.013985	0.0115	0.009919	0.0088518	0.0080524	0.007371	0.0067554	0.0062033	0.10491	0	

coverage	high_quality_coverage_count	
0	20242595
1	767073
2	452822
3	334694
4	257484
5	205088
6	165815
7	137494
8	113523
9	95711
10	79740
11	66093
12	55171
13	46293
14	39151
15	33578
16	29078
17	25511
18	22369
19	19436
20	17149
21	15237
22	13724
23	12740
24	11881
25	10943
26	9830
27	8965
28	8684
29	7927
30	7541
31	7097
32	6685
33	6187
34	5941
35	5422
36	5257
37	5125
38	4882
39	4607
40	4386
41	4334
42	4080
43	3882
44	3708
45	3550
46	3457
47	3461
48	3272
49	3234
50	3051
51	2880
52	2730
53	2626
54	2532
55	2416
56	2369
57	2363
58	2190
59	2066
60	2007
61	1956
62	2005
63	2008
64	1948
65	1851
66	1749
67	1854
68	1788
69	1729
70	1615
71	1679
72	1657
73	1707
74	1615
75	1627
76	1583
77	1578
78	1565
79	1481
80	1465
81	1473
82	1515
83	1511
84	1449
85	1540
86	1441
87	1459
88	1359
89	1337
90	1358
91	1326
92	1313
93	1328
94	1363
95	1274
96	1284
97	1272
98	1241
99	1291
100	1337
101	1293
102	1329
103	1291
104	1242
105	1282
106	1224
107	1175
108	1260
109	1216
110	1253
111	1158
112	1198
113	1190
114	1187
115	1147
116	1109
117	1119
118	1097
119	1096
120	1010
121	1014
122	983
123	1013
124	1025
125	999
126	1024
127	952
128	963
129	926
130	975
131	962
132	914
133	877
134	862
135	872
136	837
137	846
138	818
139	824
140	830
141	855
142	793
143	747
144	763
145	721
146	803
147	783
148	759
149	730
150	763
151	659
152	673
153	624
154	638
155	662
156	574
157	622
158	594
159	590
160	550
161	580
162	500
163	472
164	455
165	464
166	440
167	416
168	457
169	459
170	393
171	408
172	392
173	397
174	396
175	365
176	352
177	329
178	356
179	328
180	314
181	310
182	317
183	304
184	336
185	301
186	305
187	323
188	300
189	357
190	272
191	338
192	305
193	272
194	288
195	263
196	311
197	321
198	328
199	333
200	305
201	321
202	303
203	315
204	341
205	321
206	292
207	268
208	256
209	276
210	261
211	289
212	252
213	253
214	255
215	286
216	270
217	254
218	289
219	297
220	295
221	269
222	288
223	275
224	241
225	267
226	252
227	245
228	223
229	246
230	255
231	265
232	269
233	260
234	246
235	260
236	221
237	209
238	229
239	201
240	223
241	216
242	189
243	226
244	220
245	212
246	201
247	197
248	184
249	213
250	62034