#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_F08.hs38DH/LP6005441-DNA_F08.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F08.hs38DH/QCmetrics/LP6005441-DNA_F08.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 41.172 12.196 41 6 0 0.023252 0.00084969 0.054774 0.0039628 0.012753 0.095592 0.99878 0.99706 0.99492 0.99173 0.98497 0.96628 0.9106 0.56283 0.15018 0.021954 0.0079253 0.0056656 0.0044041 0.0035344 0.99784 27 coverage high_quality_coverage_count 0 3359371 1 1370749 2 1165691 3 1093905 4 1082122 5 1092124 6 1119458 7 1161127 8 1221368 9 1298817 10 1401287 11 1531808 12 1696428 13 1918713 14 2200596 15 2551115 16 2999458 17 3562394 18 4282467 19 5179744 20 6343364 21 7833449 22 9740033 23 12176543 24 15268700 25 19124675 26 23868404 27 29593785 28 36344500 29 44089077 30 52785285 31 62280838 32 72382745 33 82770924 34 93135129 35 103062784 36 112131537 37 120018084 38 126322744 39 130769664 40 133219008 41 133517674 42 131721414 43 127921337 44 122315428 45 115133533 46 106755408 47 97528941 48 87849235 49 77974671 50 68230724 51 58910249 52 50205559 53 42235142 54 35098361 55 28812404 56 23379133 57 18774026 58 14936971 59 11786192 60 9230932 61 7192676 62 5577826 63 4330347 64 3364548 65 2634700 66 2079024 67 1662797 68 1353930 69 1123864 70 952305 71 824530 72 727998 73 653941 74 596428 75 552821 76 516114 77 487081 78 460405 79 437799 80 416743 81 397253 82 380367 83 365025 84 349997 85 335536 86 323695 87 310159 88 299181 89 288750 90 278436 91 268112 92 259799 93 250976 94 241884 95 232819 96 225483 97 217717 98 210973 99 203583 100 196954 101 190478 102 183837 103 178341 104 173305 105 167569 106 162564 107 157535 108 152961 109 148110 110 144512 111 139871 112 136118 113 132105 114 128800 115 124694 116 121892 117 118403 118 114828 119 112088 120 108341 121 105722 122 102676 123 99746 124 96127 125 93772 126 90786 127 88718 128 86649 129 84158 130 81519 131 80117 132 77698 133 75759 134 74114 135 72069 136 70264 137 68658 138 67245 139 65398 140 64152 141 62355 142 60813 143 59540 144 58460 145 56833 146 56116 147 54604 148 53315 149 52181 150 50625 151 49542 152 48323 153 47212 154 46277 155 45527 156 44714 157 43672 158 42762 159 41957 160 41393 161 40162 162 39245 163 38426 164 37573 165 37237 166 35982 167 35970 168 35004 169 34147 170 33670 171 32742 172 32477 173 31691 174 31050 175 30610 176 30257 177 29736 178 28931 179 28735 180 28172 181 27694 182 27426 183 26991 184 26686 185 26390 186 26077 187 25288 188 24997 189 24381 190 23896 191 23722 192 23559 193 23089 194 22642 195 22181 196 21948 197 21809 198 21494 199 20951 200 21123 201 20531 202 20321 203 19787 204 19637 205 19398 206 19329 207 18764 208 18963 209 18316 210 18066 211 18021 212 17678 213 17534 214 17025 215 16809 216 16687 217 16187 218 16141 219 15743 220 15794 221 15447 222 15164 223 15068 224 14718 225 14734 226 14378 227 14304 228 14068 229 13909 230 13560 231 13327 232 13186 233 13195 234 12924 235 12991 236 13012 237 12636 238 12439 239 12351 240 12230 241 12186 242 11992 243 11771 244 11849 245 11637 246 11524 247 11273 248 11224 249 11168 250 2064383