#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_F09.hs38DH/LP6005441-DNA_F09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F09.hs38DH/QCmetrics/LP6005441-DNA_F09.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 37.095 11.839 37 5 0 0.018979 0.0013221 0.057155 0.0030123 0.012709 0.093177 0.99849 0.99636 0.99373 0.98926 0.97736 0.93778 0.82489 0.35585 0.05819 0.010918 0.006665 0.0051268 0.0041266 0.003396 0.99731 26 coverage high_quality_coverage_count 0 4159374 1 1711944 2 1444196 3 1352661 4 1322605 5 1327262 6 1360719 7 1417712 8 1509539 9 1631793 10 1811234 11 2043153 12 2352624 13 2760583 14 3301390 15 4008421 16 4939091 17 6151425 18 7756180 19 9845879 20 12587509 21 16134567 22 20659778 23 26275485 24 33117452 25 41268291 26 50665735 27 61176126 28 72589833 29 84504310 30 96575072 31 108215295 32 118929815 33 128164672 34 135509469 35 140567716 36 143031174 37 142861299 38 140096414 39 134967522 40 127759152 41 118839795 42 108688467 43 97801870 44 86590761 45 75458909 46 64794238 47 54773686 48 45678528 49 37570344 50 30508003 51 24439222 52 19360841 53 15188028 54 11794180 55 9090247 56 6973537 57 5332661 58 4082210 59 3132945 60 2431210 61 1910043 62 1523036 63 1240738 64 1036938 65 884753 66 773268 67 689612 68 624219 69 573517 70 531804 71 500005 72 471517 73 445345 74 424301 75 404448 76 386372 77 370436 78 353859 79 338712 80 325083 81 311480 82 298827 83 287774 84 277020 85 266854 86 257593 87 249654 88 241206 89 232957 90 226987 91 220010 92 214110 93 206711 94 201829 95 196831 96 192385 97 186903 98 183290 99 178600 100 174053 101 169857 102 165901 103 161303 104 158047 105 154135 106 150362 107 146653 108 142860 109 140036 110 136084 111 132601 112 129412 113 125764 114 122005 115 119221 116 116258 117 112701 118 109166 119 106922 120 104095 121 101381 122 99099 123 95890 124 93190 125 90920 126 88063 127 85920 128 83937 129 82080 130 79550 131 78177 132 75968 133 73850 134 72335 135 70788 136 68984 137 67066 138 65914 139 64155 140 62293 141 61578 142 60155 143 58053 144 57393 145 55721 146 55146 147 54048 148 52721 149 52091 150 50987 151 49721 152 48872 153 47663 154 46780 155 45855 156 44928 157 44020 158 42861 159 42084 160 41632 161 40585 162 40241 163 39237 164 38714 165 37968 166 37326 167 36734 168 35925 169 35461 170 34732 171 34207 172 33528 173 33449 174 32730 175 31590 176 31361 177 30764 178 30299 179 29685 180 29112 181 28574 182 27960 183 27809 184 27289 185 26824 186 26414 187 26267 188 25724 189 25285 190 24882 191 24286 192 24397 193 24093 194 23646 195 23050 196 22756 197 22484 198 22026 199 21760 200 21550 201 21101 202 20687 203 20829 204 20140 205 19995 206 19921 207 19289 208 19326 209 18922 210 18567 211 18606 212 18118 213 18102 214 17608 215 17286 216 17069 217 16742 218 16597 219 16448 220 15986 221 15925 222 15731 223 15449 224 15170 225 15173 226 14817 227 14601 228 14347 229 13948 230 13876 231 13927 232 13647 233 13536 234 13489 235 13211 236 13015 237 12822 238 12662 239 12464 240 12133 241 12078 242 12029 243 12007 244 11836 245 11829 246 11397 247 11432 248 11225 249 11350 250 1895710