#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_F10.hs38DH/LP6005441-DNA_F10.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F10.hs38DH/QCmetrics/LP6005441-DNA_F10.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 33.643 11.25 33 5 0 0.032209 0.00087672 0.076176 0.0041957 0.015063 0.12852 0.99849 0.99599 0.99228 0.9836 0.95482 0.86837 0.68686 0.21635 0.028418 0.0072591 0.0048635 0.0036828 0.0029092 0.0023729 0.99703 25 coverage high_quality_coverage_count 0 4161979 1 1935482 2 1676130 3 1613945 4 1625071 5 1680390 6 1790357 7 1961337 8 2207437 9 2555037 10 3015365 11 3643606 12 4488514 13 5615534 14 7110075 15 9087286 16 11652306 17 14940097 18 19111942 19 24271118 20 30537506 21 37921931 22 46471030 23 56083702 24 66562019 25 77689386 26 89087957 27 100364792 28 111022311 29 120618217 30 128704227 31 134854832 32 138807126 33 140437504 34 139576168 35 136342119 36 130936803 37 123620227 38 114796009 39 104873750 40 94261534 41 83394707 42 72654423 43 62323021 44 52684216 45 43894185 46 36061535 47 29237593 48 23395812 49 18516100 50 14490073 51 11232864 52 8639324 53 6601494 54 5031994 55 3828281 56 2921278 57 2252104 58 1753894 59 1392525 60 1128268 61 936079 62 797032 63 691141 64 616652 65 559354 66 512978 67 475693 68 445361 69 420645 70 396803 71 378084 72 359626 73 341860 74 328257 75 315439 76 299166 77 287731 78 274713 79 262715 80 252583 81 242688 82 233174 83 224678 84 214665 85 206245 86 198403 87 191541 88 183657 89 178248 90 172361 91 165828 92 159910 93 154082 94 148863 95 144200 96 138903 97 134128 98 129287 99 126181 100 121258 101 117060 102 113277 103 109937 104 106084 105 102537 106 98835 107 96588 108 93341 109 90441 110 86959 111 84715 112 81818 113 78786 114 76594 115 74395 116 72198 117 70066 118 67820 119 66342 120 64546 121 62811 122 61068 123 59117 124 57710 125 56595 126 54870 127 53829 128 52320 129 51266 130 49606 131 48834 132 47687 133 46307 134 45079 135 44247 136 43549 137 42659 138 41766 139 40971 140 40445 141 39313 142 38893 143 37883 144 36925 145 35998 146 35028 147 34909 148 34038 149 33467 150 32424 151 32402 152 31498 153 31174 154 30901 155 30082 156 29590 157 28906 158 28708 159 28073 160 27733 161 27274 162 26949 163 26500 164 25965 165 25577 166 25614 167 24921 168 24313 169 24520 170 23729 171 23236 172 22818 173 22585 174 22104 175 21977 176 21568 177 21419 178 21162 179 20580 180 20399 181 19976 182 19687 183 19655 184 19289 185 19059 186 18691 187 18639 188 18332 189 18164 190 17637 191 17538 192 17047 193 16888 194 16801 195 16139 196 16202 197 15596 198 15434 199 15428 200 15339 201 15218 202 14905 203 14714 204 14537 205 14122 206 14204 207 13951 208 13844 209 13625 210 13478 211 13221 212 12934 213 13098 214 12631 215 12710 216 12533 217 12308 218 12113 219 12188 220 11775 221 11646 222 11449 223 11469 224 11344 225 11121 226 10960 227 10971 228 10604 229 10544 230 10430 231 10391 232 10176 233 10281 234 10097 235 9979 236 9890 237 9754 238 9542 239 9521 240 9322 241 9192 242 9074 243 9036 244 8912 245 8686 246 8568 247 8508 248 8651 249 8401 250 1606924