#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005441-DNA_F12.hs38DH/LP6005441-DNA_F12.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F12.hs38DH/QCmetrics/LP6005441-DNA_F12.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 35.079 11.603 35 5 0 0.024332 0.0027349 0.074233 0.0042991 0.011458 0.11706 0.99868 0.99654 0.99356 0.9874 0.96855 0.9068 0.753 0.26113 0.03559 0.0096385 0.0066244 0.0050293 0.0039575 0.0031904 0.9975 26 coverage high_quality_coverage_count 0 3621951 1 1677210 2 1462966 3 1381274 4 1371779 5 1405659 6 1476533 7 1581508 8 1740792 9 1968387 10 2271026 11 2678748 12 3218042 13 3925554 14 4847805 15 6063865 16 7651982 17 9731421 18 12438223 19 15919688 20 20344659 21 25878960 22 32642916 23 40720646 24 50095534 25 60671235 26 72175795 27 84350352 28 96698059 29 108732485 30 119891141 31 129635642 32 137397018 33 142777435 34 145546246 35 145550273 36 142818791 37 137512037 38 129933998 39 120579917 40 109948889 41 98472365 42 86709447 43 75082192 44 63955998 45 53606770 46 44273841 47 35997485 48 28876260 49 22854176 50 17888373 51 13840243 52 10622037 53 8089391 54 6138519 55 4657546 56 3542612 57 2725000 58 2123743 59 1686755 60 1373414 61 1149097 62 985787 63 867080 64 778203 65 711753 66 660315 67 618450 68 583941 69 554652 70 528202 71 503323 72 481727 73 460817 74 442944 75 425385 76 409061 77 393100 78 376822 79 361870 80 347895 81 335237 82 320635 83 308584 84 298088 85 286832 86 277117 87 265841 88 256549 89 248517 90 240807 91 233035 92 226046 93 218494 94 212384 95 207054 96 200886 97 195434 98 189719 99 183861 100 178994 101 173092 102 168683 103 164001 104 159369 105 154550 106 150197 107 146040 108 141675 109 137933 110 133329 111 130201 112 125402 113 122505 114 118679 115 115303 116 111963 117 108465 118 104837 119 101919 120 99125 121 95611 122 93945 123 91472 124 88147 125 86351 126 84072 127 81418 128 79075 129 77033 130 75511 131 73466 132 71095 133 69090 134 68013 135 65902 136 64112 137 62922 138 61063 139 59747 140 58540 141 57789 142 55441 143 54823 144 52813 145 51994 146 50512 147 49821 148 48422 149 47521 150 46095 151 45081 152 44380 153 42986 154 42019 155 41587 156 40557 157 39760 158 39237 159 38014 160 36927 161 37074 162 35960 163 34922 164 34464 165 33953 166 33373 167 32669 168 31620 169 31650 170 30660 171 30499 172 29879 173 28979 174 28614 175 28463 176 27796 177 27506 178 26768 179 26721 180 26208 181 25808 182 25474 183 24829 184 24400 185 24070 186 23817 187 23371 188 23166 189 22926 190 22583 191 22092 192 22009 193 21663 194 21157 195 20683 196 20382 197 20170 198 19804 199 19560 200 19410 201 18926 202 18792 203 18243 204 18184 205 17597 206 17578 207 17252 208 16927 209 16826 210 16585 211 16424 212 16161 213 16005 214 15774 215 15489 216 15244 217 15118 218 14977 219 14749 220 14346 221 14614 222 14260 223 14066 224 13876 225 13645 226 13501 227 13411 228 13415 229 13319 230 12677 231 12965 232 12490 233 12384 234 12066 235 12060 236 11815 237 11650 238 11713 239 11303 240 11401 241 11236 242 11194 243 10945 244 10898 245 10787 246 10607 247 10359 248 10292 249 10370 250 1738938