#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_F12.hs38DH/LP6005441-DNA_F12.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_F12.hs38DH/QCmetrics/LP6005441-DNA_F12.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.3937	17.161	0	0	0	0.04726	0.0082852	0.070009	0.023409	0.34513	0.49409	0.15887	0.066784	0.036178	0.024284	0.018847	0.015893	0.013933	0.011387	0.009829	0.0088174	0.0080736	0.0074887	0.0070264	0.0065975	0.11043	1	

coverage	high_quality_coverage_count	
0	19881139
1	1044131
2	515408
3	352791
4	264350
5	211960
6	169984
7	136843
8	112007
9	92619
10	76453
11	64643
12	54621
13	46140
14	39287
15	33374
16	28942
17	25251
18	22047
19	18879
20	16887
21	14846
22	13807
23	12530
24	11770
25	10597
26	9650
27	9211
28	8706
29	8164
30	7588
31	7205
32	6879
33	6291
34	6098
35	5770
36	5432
37	5274
38	4924
39	4701
40	4472
41	4360
42	4135
43	3906
44	3647
45	3624
46	3418
47	3232
48	3138
49	2902
50	2742
51	2701
52	2639
53	2486
54	2317
55	2343
56	2241
57	2271
58	2123
59	2048
60	2027
61	1925
62	1858
63	1825
64	1722
65	1691
66	1638
67	1715
68	1601
69	1578
70	1520
71	1570
72	1454
73	1456
74	1366
75	1436
76	1288
77	1231
78	1267
79	1237
80	1107
81	1176
82	1106
83	1099
84	1133
85	1075
86	1056
87	1084
88	1015
89	1076
90	1072
91	1052
92	987
93	997
94	1041
95	1002
96	1005
97	964
98	1072
99	946
100	970
101	973
102	944
103	1011
104	966
105	1017
106	1007
107	975
108	978
109	911
110	924
111	955
112	947
113	954
114	853
115	890
116	896
117	896
118	865
119	895
120	903
121	860
122	831
123	809
124	808
125	882
126	876
127	821
128	759
129	827
130	796
131	751
132	748
133	761
134	760
135	703
136	730
137	832
138	784
139	768
140	760
141	732
142	790
143	800
144	787
145	812
146	781
147	772
148	767
149	762
150	683
151	749
152	711
153	708
154	752
155	757
156	702
157	674
158	726
159	747
160	755
161	758
162	787
163	736
164	727
165	747
166	755
167	722
168	696
169	684
170	747
171	731
172	721
173	695
174	717
175	742
176	685
177	720
178	678
179	693
180	664
181	690
182	692
183	630
184	681
185	679
186	670
187	661
188	665
189	594
190	613
191	618
192	588
193	548
194	534
195	586
196	500
197	564
198	512
199	556
200	527
201	522
202	494
203	444
204	493
205	476
206	477
207	436
208	481
209	528
210	481
211	474
212	457
213	467
214	475
215	443
216	441
217	422
218	428
219	425
220	427
221	434
222	412
223	442
224	420
225	466
226	411
227	383
228	387
229	362
230	394
231	411
232	374
233	428
234	401
235	384
236	368
237	341
238	327
239	301
240	329
241	319
242	318
243	327
244	321
245	302
246	319
247	300
248	326
249	287
250	58980