#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005441-DNA_H02.hs38DH/LP6005441-DNA_H02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005441-DNA_H02.hs38DH/QCmetrics/LP6005441-DNA_H02.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	23.04	26.165	19	4	0	0.048696	0.0015758	0.033091	0.011355	0.29914	0.39385	0.99835	0.99021	0.93754	0.79157	0.49867	0.20818	0.080728	0.038089	0.029893	0.025929	0.023004	0.02048	0.018234	0.016413	0.99113	21	

coverage	high_quality_coverage_count	
0	39016
1	28168
2	36204
3	50347
4	77744
5	118855
6	173831
7	242550
8	317296
9	392220
10	474985
11	565005
12	670457
13	796115
14	943686
15	1112857
16	1275449
17	1419600
18	1530267
19	1585023
20	1586174
21	1527255
22	1412074
23	1255060
24	1085489
25	903422
26	734668
27	580587
28	452228
29	341613
30	254132
31	189360
32	141415
33	107873
34	82350
35	64746
36	52165
37	44262
38	38121
39	33394
40	29295
41	26165
42	23971
43	21403
44	19261
45	17166
46	15772
47	14471
48	13573
49	12657
50	11825
51	11168
52	10366
53	9764
54	9287
55	8756
56	8541
57	8258
58	7884
59	7843
60	7638
61	7394
62	7333
63	6979
64	6936
65	6906
66	6781
67	6620
68	6256
69	6292
70	6293
71	6146
72	6003
73	5895
74	5885
75	6100
76	5889
77	5862
78	5864
79	5714
80	5644
81	5589
82	5535
83	5386
84	5356
85	5333
86	5240
87	5190
88	4895
89	4926
90	4736
91	4608
92	4412
93	4395
94	4296
95	4259
96	4280
97	4047
98	4018
99	3987
100	3929
101	3823
102	3601
103	3494
104	3310
105	3149
106	3146
107	3021
108	2895
109	2808
110	2709
111	2601
112	2540
113	2482
114	2288
115	2209
116	2092
117	2094
118	2023
119	2152
120	1820
121	1833
122	1774
123	1707
124	1726
125	1650
126	1630
127	1554
128	1546
129	1524
130	1433
131	1362
132	1340
133	1415
134	1326
135	1300
136	1311
137	1239
138	1340
139	1196
140	1214
141	1179
142	1234
143	1150
144	1140
145	1134
146	1143
147	1116
148	1101
149	1136
150	1135
151	1077
152	1110
153	1113
154	1025
155	1021
156	995
157	1011
158	914
159	947
160	985
161	989
162	969
163	950
164	933
165	967
166	974
167	929
168	954
169	888
170	900
171	959
172	937
173	905
174	924
175	924
176	879
177	822
178	875
179	848
180	832
181	861
182	892
183	891
184	903
185	833
186	866
187	847
188	840
189	831
190	856
191	847
192	868
193	887
194	836
195	856
196	760
197	814
198	852
199	902
200	896
201	872
202	920
203	927
204	932
205	831
206	902
207	864
208	892
209	926
210	952
211	856
212	928
213	873
214	889
215	913
216	874
217	810
218	814
219	856
220	786
221	797
222	783
223	803
224	761
225	794
226	757
227	734
228	742
229	771
230	731
231	718
232	693
233	651
234	711
235	734
236	731
237	738
238	734
239	762
240	767
241	730
242	687
243	701
244	616
245	657
246	675
247	637
248	643
249	619
250	204686