#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_B02.hs38DH/LP6005442-DNA_B02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_B02.hs38DH/QCmetrics/LP6005442-DNA_B02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 33.473 10.74 33 5 0 0.01993 0.0011835 0.039684 0.0042167 0.012615 0.077628 0.99849 0.9958 0.9924 0.98633 0.96774 0.89558 0.70311 0.1796 0.019079 0.0067258 0.0047177 0.0035934 0.0028897 0.0024052 0.99704 25 coverage high_quality_coverage_count 0 4159251 1 2138426 2 1834013 3 1724592 4 1694448 5 1705549 6 1750139 7 1824104 8 1937402 9 2122724 10 2372481 11 2716241 12 3176962 13 3790686 14 4607077 15 5724513 16 7258382 17 9386406 18 12338313 19 16378175 20 21804507 21 28869761 22 37779206 23 48603606 24 61243967 25 75458210 26 90697503 27 106285752 28 121379354 29 135091995 30 146612054 31 155191722 32 160237868 33 161589370 34 159084649 35 153134028 36 144171107 37 132826893 38 119823405 39 105909876 40 91791634 41 78071454 42 65194485 43 53481503 44 43150762 45 34270750 46 26802547 47 20685449 48 15767793 49 11885607 50 8894371 51 6629912 52 4929474 53 3672837 54 2760968 55 2109574 56 1644638 57 1312588 58 1079682 59 912400 60 792273 61 704304 62 638006 63 584447 64 540985 65 505440 66 475547 67 448385 68 424648 69 404171 70 382792 71 364821 72 345897 73 329882 74 312315 75 296707 76 283428 77 270443 78 257470 79 245667 80 233938 81 223636 82 212666 83 204418 84 195464 85 186839 86 179297 87 171990 88 165853 89 159843 90 154525 91 148314 92 144167 93 138876 94 133810 95 130058 96 126216 97 122117 98 118295 99 114941 100 111981 101 108517 102 104982 103 102088 104 99278 105 96532 106 94656 107 92467 108 89860 109 86986 110 84341 111 82084 112 80751 113 78170 114 75940 115 74215 116 72903 117 70727 118 69801 119 67631 120 65583 121 63739 122 62353 123 61218 124 59176 125 57613 126 56237 127 54908 128 53168 129 52095 130 50671 131 49748 132 48557 133 47788 134 46716 135 45005 136 43897 137 43190 138 42125 139 41261 140 40249 141 39536 142 38852 143 37988 144 37732 145 36646 146 36442 147 35815 148 34623 149 34155 150 33330 151 32704 152 32156 153 31316 154 31427 155 30725 156 30350 157 29861 158 29716 159 28744 160 28398 161 27606 162 27426 163 27213 164 26629 165 26226 166 25324 167 25041 168 24605 169 24471 170 23976 171 23691 172 23377 173 22815 174 22614 175 22223 176 21806 177 21604 178 21495 179 20920 180 20539 181 20473 182 19822 183 19655 184 19826 185 19675 186 19533 187 19036 188 18705 189 18383 190 18175 191 17897 192 17741 193 17512 194 17350 195 16877 196 16965 197 16400 198 16093 199 15915 200 16086 201 15765 202 15600 203 15204 204 15016 205 14917 206 14904 207 14739 208 14566 209 14454 210 14162 211 14081 212 14037 213 13666 214 13471 215 13594 216 13288 217 13037 218 13104 219 12953 220 12887 221 12732 222 12565 223 12441 224 12081 225 12118 226 11774 227 11717 228 11764 229 11589 230 11485 231 11348 232 10944 233 10901 234 10758 235 10751 236 10452 237 10424 238 10488 239 10313 240 10263 241 9944 242 9954 243 9794 244 9809 245 9723 246 9496 247 9147 248 9261 249 9278 250 1671146