#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_C02.hs38DH/LP6005442-DNA_C02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_C02.hs38DH/QCmetrics/LP6005442-DNA_C02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 35.45 11.516 35 5 0 0.01752 0.0032361 0.043101 0.0038592 0.012996 0.080712 0.99879 0.99669 0.99393 0.98888 0.97447 0.92396 0.78104 0.2679 0.031928 0.0084151 0.0060043 0.0047037 0.0038306 0.0032047 0.99766 26 coverage high_quality_coverage_count 0 3333329 1 1616664 2 1430354 3 1369383 4 1354191 5 1366162 6 1404026 7 1475241 8 1581082 9 1744157 10 1961635 11 2261492 12 2654631 13 3171749 14 3835124 15 4719281 16 5874027 17 7393376 18 9444500 19 12157021 20 15740645 21 20389910 22 26334656 23 33716996 24 42629551 25 53095345 26 64954609 27 77914418 28 91547260 29 105217027 30 118382796 31 130325222 32 140295337 33 147794583 34 152365542 35 153735176 36 151846766 37 146892148 38 139192135 39 129277567 40 117708232 41 105082537 42 92044903 43 79114940 44 66788489 45 55408260 46 45181631 47 36231838 48 28614437 49 22258698 50 17078701 51 12944481 52 9707876 53 7236177 54 5370571 55 3986989 56 2969623 57 2241856 58 1721220 59 1354446 60 1096965 61 913160 62 783795 63 689728 64 621274 65 570588 66 529501 67 498566 68 471411 69 449893 70 429594 71 411238 72 391816 73 377319 74 362353 75 347533 76 334549 77 318933 78 306315 79 294150 80 282091 81 271785 82 261151 83 252505 84 242663 85 233982 86 225219 87 217514 88 209782 89 202670 90 196233 91 190657 92 184759 93 178013 94 173012 95 167987 96 163600 97 159944 98 154890 99 150799 100 147723 101 143907 102 140253 103 138072 104 134817 105 131908 106 129081 107 126162 108 124025 109 121235 110 118368 111 115365 112 112888 113 109443 114 106712 115 103621 116 100725 117 98515 118 95890 119 93711 120 91122 121 89154 122 87004 123 85187 124 83083 125 81455 126 78743 127 76778 128 74824 129 73690 130 71367 131 69700 132 68203 133 66365 134 65241 135 63328 136 62151 137 61329 138 59974 139 58410 140 57205 141 56259 142 54602 143 53480 144 52505 145 51983 146 51182 147 50064 148 49170 149 48196 150 47866 151 47147 152 45529 153 45117 154 44551 155 43913 156 43317 157 42719 158 41496 159 40800 160 40231 161 39381 162 38940 163 38073 164 37278 165 37299 166 36432 167 35821 168 35311 169 34980 170 34532 171 33727 172 33252 173 32541 174 31877 175 31273 176 30905 177 30586 178 30001 179 29566 180 29268 181 28457 182 28104 183 27903 184 27640 185 26865 186 26947 187 26767 188 26278 189 25796 190 25369 191 24933 192 24750 193 23978 194 23955 195 23412 196 23151 197 22879 198 22464 199 21624 200 21635 201 21502 202 21219 203 20964 204 20683 205 20386 206 19923 207 19728 208 19305 209 19348 210 18922 211 18696 212 18521 213 18319 214 17772 215 17636 216 17396 217 17211 218 17030 219 17040 220 16755 221 16605 222 16507 223 16266 224 15955 225 15729 226 15488 227 15703 228 15312 229 15169 230 14757 231 14736 232 14374 233 14437 234 14367 235 14104 236 13866 237 13968 238 13409 239 13361 240 13129 241 12895 242 12890 243 12480 244 12401 245 12345 246 12183 247 12310 248 11950 249 11772 250 1968793