#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_D01.hs38DH/LP6005442-DNA_D01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_D01.hs38DH/QCmetrics/LP6005442-DNA_D01.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 33.573 11.071 33 5 0 0.023012 0.0022094 0.068754 0.0032531 0.013065 0.11029 0.99871 0.99638 0.99328 0.98716 0.96768 0.89489 0.70463 0.18178 0.019858 0.0074914 0.0053443 0.0041048 0.0032938 0.0027316 0.99743 26 coverage high_quality_coverage_count 0 3534710 1 1833568 2 1593528 3 1503503 4 1475870 5 1493535 6 1560438 7 1654942 8 1810333 9 2016165 10 2296868 11 2689318 12 3189007 13 3866018 14 4769179 15 5987115 16 7634113 17 9884542 18 12951711 19 17067863 20 22499245 21 29487423 22 38214789 23 48770195 24 61068120 25 74859985 26 89712791 27 104974054 28 119816633 29 133443766 30 145026016 31 153758503 32 159189508 33 160862677 34 158841756 35 153279220 36 144656273 37 133549531 38 120736256 39 106891730 40 92737848 41 78893472 42 65885803 43 54022703 44 43536263 45 34518216 46 26950071 47 20744208 48 15778328 49 11879185 50 8862817 51 6597192 52 4901033 53 3662814 54 2765283 55 2122236 56 1667859 57 1341887 58 1112115 59 949115 60 832385 61 744481 62 675517 63 623380 64 580357 65 544095 66 512722 67 486625 68 461791 69 438942 70 415833 71 395597 72 377784 73 360557 74 345507 75 329417 76 315770 77 301551 78 287932 79 275937 80 265755 81 254396 82 243337 83 235433 84 224746 85 216504 86 208073 87 200643 88 193711 89 186014 90 178913 91 173030 92 167996 93 162092 94 156325 95 151157 96 146168 97 141241 98 136691 99 131335 100 127706 101 123830 102 120454 103 116711 104 113744 105 109927 106 107207 107 103318 108 100289 109 97644 110 94978 111 92377 112 89332 113 86556 114 84884 115 83016 116 80988 117 78259 118 76153 119 74239 120 72612 121 71263 122 69721 123 67920 124 66650 125 65267 126 63696 127 62186 128 60913 129 59535 130 58542 131 57413 132 56089 133 55604 134 54456 135 53497 136 52732 137 51282 138 50379 139 49223 140 48479 141 47390 142 47073 143 45659 144 45011 145 44114 146 43731 147 42975 148 41903 149 41243 150 40220 151 40000 152 39241 153 37821 154 37603 155 36989 156 36272 157 35987 158 35318 159 34319 160 33713 161 33340 162 32682 163 31855 164 31525 165 30777 166 29865 167 29479 168 29165 169 28404 170 28218 171 27721 172 27234 173 26552 174 26364 175 25851 176 24806 177 24479 178 24462 179 24389 180 23743 181 23031 182 22825 183 23091 184 22268 185 21996 186 21756 187 21105 188 20932 189 20659 190 20696 191 19863 192 19978 193 19915 194 19506 195 19079 196 18736 197 18498 198 18448 199 18060 200 17952 201 17679 202 17209 203 17034 204 16708 205 16759 206 16501 207 16242 208 15884 209 16033 210 15818 211 15606 212 15365 213 14809 214 14763 215 14773 216 14486 217 14170 218 14069 219 13937 220 13760 221 13656 222 13401 223 13547 224 12967 225 13015 226 12758 227 12873 228 12653 229 12374 230 12165 231 12146 232 12026 233 11654 234 11508 235 11545 236 11425 237 11162 238 11198 239 10833 240 10707 241 10662 242 10498 243 10397 244 10192 245 10276 246 9860 247 9916 248 9719 249 9732 250 1874971