#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005442-DNA_D01.hs38DH/LP6005442-DNA_D01.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_D01.hs38DH/QCmetrics/LP6005442-DNA_D01.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 21.241 26.508 17 3 0 0.07208 0.0017044 0.053813 0.0053356 0.36808 0.50102 0.99773 0.99236 0.94769 0.69451 0.30004 0.09974 0.053305 0.039806 0.034908 0.031324 0.028241 0.025756 0.023653 0.021732 0.99142 21 coverage high_quality_coverage_count 0 53669 1 28577 2 25762 3 30800 4 41739 5 64066 6 103119 7 171300 8 279584 9 437821 10 654320 11 913740 12 1201056 13 1483668 14 1731400 15 1903281 16 1979826 17 1956368 18 1837995 19 1646370 20 1410436 21 1163997 22 922612 23 707224 24 530146 25 385543 26 276479 27 196445 28 139477 29 99602 30 72066 31 53092 32 40789 33 32602 34 27042 35 23332 36 20532 37 17945 38 16499 39 15166 40 14266 41 13180 42 12384 43 12080 44 11656 45 11311 46 10812 47 10636 48 10013 49 9425 50 9214 51 8983 52 8745 53 8785 54 8553 55 8425 56 8140 57 8041 58 7954 59 7874 60 7824 61 7643 62 7584 63 7461 64 7382 65 7348 66 7100 67 7126 68 6696 69 6708 70 6450 71 6398 72 6151 73 6175 74 5981 75 5656 76 5391 77 5633 78 5504 79 5398 80 5424 81 5397 82 5194 83 5119 84 5009 85 4745 86 4877 87 4629 88 4673 89 4636 90 4513 91 4388 92 4401 93 4501 94 4454 95 4456 96 4632 97 4622 98 4679 99 4763 100 4777 101 4866 102 4949 103 5075 104 5191 105 5076 106 5163 107 5116 108 5310 109 5228 110 5248 111 5249 112 5268 113 5406 114 5555 115 5655 116 5681 117 5568 118 5773 119 5782 120 5622 121 5574 122 5495 123 5359 124 5313 125 5313 126 5214 127 5145 128 4996 129 4947 130 4777 131 4736 132 4491 133 4349 134 4333 135 4237 136 4046 137 3906 138 3874 139 3606 140 3586 141 3273 142 3340 143 3195 144 3001 145 3042 146 2886 147 2808 148 2680 149 2584 150 2456 151 2482 152 2260 153 2300 154 2148 155 2126 156 2020 157 1953 158 1823 159 1929 160 1750 161 1748 162 1768 163 1646 164 1598 165 1606 166 1535 167 1538 168 1586 169 1432 170 1368 171 1386 172 1360 173 1279 174 1236 175 1193 176 1243 177 1245 178 1184 179 1179 180 1142 181 1184 182 1043 183 1092 184 1044 185 1062 186 1043 187 1043 188 902 189 987 190 948 191 882 192 963 193 929 194 913 195 870 196 875 197 891 198 877 199 817 200 788 201 833 202 761 203 761 204 796 205 770 206 755 207 728 208 722 209 702 210 788 211 752 212 724 213 724 214 705 215 652 216 609 217 647 218 645 219 597 220 590 221 575 222 631 223 601 224 595 225 581 226 557 227 596 228 578 229 592 230 552 231 522 232 546 233 530 234 504 235 539 236 515 237 578 238 496 239 481 240 496 241 485 242 483 243 512 244 468 245 481 246 471 247 430 248 451 249 467 250 181760