#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_D02.hs38DH/LP6005442-DNA_D02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_D02.hs38DH/QCmetrics/LP6005442-DNA_D02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 36.325 11.64 36 5 0 0.019173 0.0040482 0.04551 0.0053309 0.014458 0.08852 0.99864 0.99658 0.99401 0.98968 0.97855 0.93983 0.81806 0.3051 0.037721 0.009137 0.0064927 0.0051336 0.0041891 0.0034861 0.99754 26 coverage high_quality_coverage_count 0 3726518 1 1650766 2 1395094 3 1317251 4 1299910 5 1297263 6 1332801 7 1379529 8 1462650 9 1591644 10 1762766 11 1981444 12 2289915 13 2686054 14 3187791 15 3828729 16 4659972 17 5746674 18 7202529 19 9149997 20 11780030 21 15293018 22 19951238 23 25927394 24 33444713 25 42628377 26 53457217 27 65775480 28 79283070 29 93472864 30 107761845 31 121419413 32 133632588 33 143727579 34 151079623 35 155318794 36 156094601 37 153546842 38 147756242 39 139252844 40 128540649 41 116273334 42 103134078 43 89707245 44 76563308 45 64176588 46 52834333 47 42772256 48 34058593 49 26695738 50 20632015 51 15735842 52 11870177 53 8866259 54 6586610 55 4871688 56 3622089 57 2710708 58 2057975 59 1594601 60 1265668 61 1035259 62 872727 63 756648 64 673476 65 609439 66 561662 67 525828 68 496338 69 469433 70 447712 71 426101 72 409355 73 391495 74 376976 75 362226 76 348819 77 336108 78 323378 79 312746 80 301490 81 290375 82 280271 83 269942 84 261345 85 253164 86 245381 87 238684 88 230180 89 224576 90 217883 91 210473 92 204814 93 199601 94 194439 95 189211 96 185359 97 180796 98 177257 99 171857 100 167572 101 163777 102 160826 103 157204 104 152969 105 149957 106 147044 107 143799 108 140967 109 137520 110 134025 111 131379 112 127214 113 124670 114 120880 115 118048 116 115038 117 113104 118 109909 119 108411 120 105658 121 103132 122 100573 123 97819 124 94819 125 92540 126 89650 127 87550 128 84937 129 82692 130 80080 131 77951 132 75657 133 73770 134 71998 135 70100 136 68094 137 66498 138 64991 139 63275 140 62216 141 60581 142 59317 143 58072 144 56223 145 55017 146 54240 147 52582 148 52031 149 51021 150 50101 151 49080 152 48079 153 47605 154 46663 155 45728 156 45032 157 43978 158 43155 159 42899 160 42192 161 41567 162 40786 163 40386 164 39242 165 38890 166 38213 167 37525 168 37288 169 36163 170 36097 171 35622 172 34816 173 34202 174 33879 175 33253 176 32655 177 32134 178 31650 179 31185 180 30334 181 29712 182 29882 183 29079 184 28354 185 28208 186 28094 187 27590 188 27192 189 26719 190 26429 191 26245 192 25916 193 25280 194 25080 195 24810 196 24243 197 23626 198 23296 199 23202 200 22596 201 22248 202 21839 203 21583 204 21264 205 21038 206 20801 207 20536 208 20216 209 19837 210 19947 211 19375 212 19316 213 18794 214 18548 215 18411 216 18225 217 17961 218 17692 219 17487 220 17235 221 16765 222 16838 223 16519 224 16370 225 15885 226 16069 227 15863 228 15574 229 15432 230 15117 231 14881 232 14598 233 14706 234 14297 235 14482 236 14010 237 14016 238 13787 239 13645 240 13472 241 13268 242 13137 243 12886 244 12655 245 12518 246 12406 247 12305 248 11977 249 11935 250 2088622