#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005442-DNA_D09.hs38DH/LP6005442-DNA_D09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_D09.hs38DH/QCmetrics/LP6005442-DNA_D09.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.5997	18.38	0	0	0	0.049477	0.0051047	0.049425	0.022845	0.39885	0.5257	0.14671	0.070226	0.039872	0.02657	0.020512	0.017133	0.014973	0.012364	0.010749	0.0096387	0.0088308	0.0082135	0.0076956	0.0072509	0.10787	0	

coverage	high_quality_coverage_count	
0	20168743
1	784150
2	447400
3	324176
4	251996
5	202145
6	164605
7	137431
8	115779
9	97494
10	83949
11	72889
12	61692
13	52514
14	43384
15	37069
16	32190
17	27410
18	24450
19	22049
20	19681
21	17686
22	15493
23	14010
24	13005
25	11953
26	11294
27	9953
28	9306
29	8541
30	7857
31	7321
32	7122
33	6589
34	6454
35	5966
36	5606
37	5369
38	4895
39	4498
40	4323
41	4233
42	4040
43	4039
44	3914
45	3714
46	3661
47	3508
48	3404
49	3334
50	3071
51	2924
52	2866
53	2805
54	2702
55	2525
56	2461
57	2414
58	2239
59	2241
60	2028
61	2088
62	2058
63	2011
64	1915
65	1898
66	1821
67	1801
68	1755
69	1721
70	1656
71	1609
72	1603
73	1474
74	1380
75	1421
76	1344
77	1321
78	1434
79	1348
80	1291
81	1255
82	1213
83	1249
84	1310
85	1259
86	1166
87	1158
88	1203
89	1137
90	1101
91	1095
92	1117
93	1078
94	1085
95	1047
96	972
97	994
98	1011
99	1010
100	1009
101	1016
102	1073
103	1073
104	1032
105	1009
106	1044
107	966
108	1046
109	1003
110	967
111	993
112	846
113	983
114	875
115	901
116	960
117	904
118	980
119	959
120	985
121	997
122	994
123	1003
124	989
125	908
126	963
127	871
128	947
129	981
130	978
131	925
132	969
133	911
134	917
135	923
136	874
137	914
138	903
139	822
140	791
141	845
142	788
143	846
144	771
145	772
146	755
147	785
148	762
149	702
150	638
151	710
152	666
153	666
154	677
155	659
156	652
157	657
158	650
159	636
160	588
161	641
162	588
163	603
164	608
165	581
166	611
167	567
168	548
169	551
170	524
171	545
172	508
173	515
174	497
175	469
176	521
177	528
178	498
179	492
180	498
181	516
182	473
183	504
184	511
185	483
186	536
187	524
188	564
189	515
190	538
191	485
192	501
193	482
194	482
195	511
196	476
197	468
198	487
199	460
200	484
201	510
202	475
203	497
204	521
205	505
206	506
207	448
208	462
209	442
210	421
211	456
212	467
213	461
214	445
215	428
216	396
217	440
218	438
219	365
220	393
221	417
222	419
223	416
224	463
225	403
226	397
227	431
228	393
229	388
230	404
231	424
232	420
233	372
234	411
235	393
236	399
237	376
238	373
239	403
240	419
241	414
242	378
243	385
244	431
245	350
246	371
247	387
248	388
249	397
250	76366