#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_E10.hs38DH/LP6005442-DNA_E10.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_E10.hs38DH/QCmetrics/LP6005442-DNA_E10.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 38.64 11.473 38 5 0 0.014651 0.0013076 0.052804 0.0030148 0.013672 0.085449 0.99878 0.99668 0.9939 0.9895 0.97973 0.95192 0.87026 0.44302 0.082543 0.011466 0.0058286 0.0043459 0.0034202 0.0027894 0.99765 26 coverage high_quality_coverage_count 0 3346783 1 1597990 2 1420752 3 1374455 4 1374251 5 1398709 6 1439540 7 1499393 8 1591955 9 1707009 10 1868416 11 2076625 12 2349669 13 2690921 14 3113374 15 3640934 16 4303273 17 5143865 18 6208837 19 7560592 20 9305337 21 11565352 22 14481835 23 18187869 24 22867769 25 28630383 26 35546688 27 43707591 28 53064914 29 63451826 30 74640853 31 86310746 32 97980443 33 109204084 34 119461565 35 128219870 36 135127651 37 139774686 38 141889477 39 141428604 40 138435097 41 133103403 42 125757151 43 116776953 44 106626453 45 95755430 46 84591666 47 73566260 48 62931607 49 53041358 50 44035592 51 36048311 52 29093529 53 23190238 54 18239901 55 14202043 56 10947564 57 8375090 58 6365831 59 4817771 60 3646539 61 2778896 62 2135242 63 1661230 64 1315072 65 1067962 66 885912 67 754026 68 658169 69 589373 70 534032 71 492059 72 458342 73 430409 74 405781 75 384681 76 366594 77 350075 78 333317 79 319186 80 306087 81 293474 82 280826 83 269084 84 257377 85 246691 86 237083 87 226626 88 217239 89 209363 90 202026 91 193898 92 188059 93 181814 94 175214 95 169356 96 164024 97 158163 98 152834 99 147843 100 143692 101 138313 102 133987 103 130840 104 126953 105 124050 106 120248 107 117381 108 114216 109 110467 110 108093 111 104395 112 102061 113 99264 114 95939 115 93600 116 91464 117 89184 118 86393 119 84696 120 82111 121 80309 122 78382 123 76728 124 73728 125 71689 126 69794 127 67830 128 66195 129 63925 130 62447 131 61227 132 59059 133 57756 134 56264 135 55159 136 54038 137 52078 138 51356 139 50066 140 48156 141 46828 142 46111 143 45011 144 43888 145 43085 146 42341 147 41277 148 40313 149 39339 150 38370 151 37608 152 36749 153 36028 154 35591 155 34907 156 34470 157 33848 158 32871 159 32646 160 31974 161 31299 162 30740 163 29752 164 29813 165 29013 166 28473 167 28337 168 27517 169 27828 170 26543 171 26593 172 25855 173 25407 174 25128 175 24663 176 23733 177 23716 178 23377 179 22944 180 22561 181 22518 182 22261 183 21881 184 21771 185 21239 186 21140 187 20580 188 20293 189 20328 190 19771 191 19749 192 19324 193 19011 194 19099 195 18674 196 18485 197 18207 198 18086 199 17784 200 17501 201 17559 202 17291 203 16913 204 16669 205 16524 206 16311 207 15968 208 16005 209 15870 210 15529 211 15387 212 15070 213 14853 214 14752 215 14681 216 14515 217 14576 218 14255 219 13970 220 13754 221 13631 222 13215 223 13331 224 12936 225 12870 226 12862 227 12393 228 12215 229 12293 230 12124 231 11792 232 11641 233 11586 234 11619 235 11125 236 11313 237 11231 238 10763 239 10622 240 10735 241 10361 242 10395 243 10321 244 10345 245 10189 246 10084 247 10024 248 9991 249 9626 250 1765405