#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_F02.hs38DH/LP6005442-DNA_F02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_F02.hs38DH/QCmetrics/LP6005442-DNA_F02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 35.885 11.262 35 5 0 0.030371 0.0030839 0.052958 0.020777 0.012526 0.11972 0.9985 0.99632 0.99359 0.98902 0.97723 0.93549 0.80548 0.2845 0.03366 0.0087729 0.0061007 0.0046681 0.0036996 0.0030107 0.99733 26 coverage high_quality_coverage_count 0 4133946 1 1723876 2 1471049 3 1395001 4 1375914 5 1387397 6 1415509 7 1473586 8 1558898 9 1691723 10 1868467 11 2109476 12 2423224 13 2816298 14 3335898 15 4017512 16 4898696 17 6070724 18 7646748 19 9766753 20 12619069 21 16457692 22 21509555 23 27988481 24 36114155 25 45938536 26 57440099 27 70388063 28 84461006 29 99035956 30 113481946 31 126984583 32 138798665 33 148202306 34 154539351 35 157517220 36 156984759 37 152994567 38 145915256 39 136216038 40 124529742 41 111558397 42 97922468 43 84323279 44 71227903 45 59076705 46 48129189 47 38549685 48 30390460 49 23591967 50 18081203 51 13682508 52 10260722 53 7637891 54 5671897 55 4211209 56 3151804 57 2387528 58 1846136 59 1459057 60 1189476 61 998942 62 865015 63 767499 64 696530 65 640458 66 594971 67 559941 68 529944 69 500320 70 476058 71 453725 72 433044 73 414935 74 397440 75 380314 76 365840 77 351369 78 338486 79 325686 80 313156 81 301561 82 290039 83 278478 84 269224 85 258988 86 250012 87 240411 88 233491 89 225867 90 217719 91 211036 92 204098 93 197805 94 191269 95 186371 96 179519 97 174073 98 168544 99 162695 100 157204 101 151520 102 145959 103 140726 104 135594 105 131257 106 126347 107 122434 108 118905 109 114642 110 111360 111 108655 112 105258 113 102002 114 99189 115 95963 116 93609 117 90547 118 88546 119 86471 120 84089 121 82229 122 79972 123 78042 124 76545 125 74717 126 73056 127 71831 128 70628 129 68385 130 67239 131 64815 132 63989 133 62719 134 61503 135 60042 136 58665 137 57423 138 56233 139 55243 140 53968 141 52611 142 51828 143 50654 144 49866 145 48820 146 47845 147 46949 148 45653 149 45296 150 43863 151 43207 152 42251 153 41601 154 41071 155 40125 156 39542 157 38849 158 37724 159 37239 160 36654 161 36255 162 35861 163 35357 164 34629 165 33947 166 33676 167 33297 168 32573 169 32652 170 31636 171 31410 172 31065 173 30509 174 29909 175 29685 176 29553 177 29008 178 28186 179 27880 180 27549 181 26951 182 26792 183 25951 184 25985 185 24950 186 25079 187 24603 188 24031 189 23873 190 23644 191 23131 192 22396 193 22322 194 22007 195 21622 196 20935 197 20960 198 20772 199 20300 200 19947 201 19917 202 19346 203 19088 204 19040 205 18712 206 18299 207 18056 208 17633 209 17616 210 17350 211 17110 212 16929 213 16759 214 16501 215 16020 216 15994 217 15813 218 15290 219 15199 220 15193 221 14974 222 14490 223 14396 224 14227 225 13905 226 13832 227 13655 228 13606 229 13188 230 13094 231 13020 232 12647 233 12516 234 12518 235 12357 236 11988 237 11959 238 11414 239 11655 240 11400 241 11221 242 11111 243 10892 244 10748 245 10523 246 10501 247 10333 248 10263 249 10077 250 1840855