#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005442-DNA_F02.hs38DH/LP6005442-DNA_F02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_F02.hs38DH/QCmetrics/LP6005442-DNA_F02.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 18.245 5.6202 18 3 0 0.023373 0.0035274 0.050228 0.021182 0.00011631 0.098426 0.99881 0.99468 0.96843 0.77949 0.37381 0.094368 0.0181 0.0036368 0.0016578 0.00089019 0.00053004 0.00033477 0.0002242 0.00016363 0.99467 23 coverage high_quality_coverage_count 0 181650 1 125733 2 139628 3 162611 4 199036 5 264081 6 389253 7 627181 8 1033777 9 1679063 10 2632151 11 3931249 12 5549004 13 7375678 14 9252902 15 10924505 16 12214033 17 12951234 18 13069321 19 12550095 20 11528453 21 10131422 22 8541901 23 6912285 24 5393416 25 4065361 26 2968600 27 2111670 28 1462181 29 993654 30 671690 31 451821 32 307127 33 214055 34 154246 35 117068 36 91306 37 74917 38 63219 39 54561 40 47662 41 42089 42 37291 43 33240 44 29853 45 26821 46 24029 47 21838 48 19795 49 18416 50 16979 51 15177 52 14362 53 12933 54 11956 55 10990 56 9892 57 8857 58 8033 59 7579 60 7242 61 6832 62 6282 63 6036 64 5727 65 5313 66 4712 67 4505 68 4258 69 3877 70 3812 71 3557 72 3269 73 3129 74 2904 75 2945 76 2765 77 2576 78 2446 79 2300 80 2250 81 2016 82 1876 83 1892 84 1670 85 1624 86 1519 87 1418 88 1272 89 1283 90 1138 91 1122 92 1058 93 960 94 964 95 911 96 863 97 778 98 749 99 670 100 634 101 611 102 604 103 570 104 536 105 458 106 436 107 433 108 411 109 442 110 407 111 380 112 387 113 329 114 326 115 267 116 274 117 302 118 272 119 295 120 267 121 285 122 283 123 256 124 270 125 257 126 270 127 264 128 248 129 231 130 233 131 249 132 182 133 214 134 188 135 224 136 178 137 174 138 164 139 180 140 168 141 167 142 172 143 156 144 187 145 167 146 146 147 167 148 169 149 164 150 157 151 164 152 167 153 186 154 189 155 152 156 154 157 164 158 167 159 125 160 141 161 123 162 141 163 139 164 130 165 126 166 128 167 118 168 114 169 114 170 139 171 121 172 99 173 92 174 85 175 75 176 110 177 99 178 101 179 76 180 88 181 76 182 63 183 83 184 78 185 84 186 60 187 66 188 71 189 80 190 80 191 56 192 69 193 76 194 75 195 52 196 70 197 90 198 63 199 71 200 67 201 77 202 53 203 96 204 79 205 84 206 68 207 75 208 82 209 72 210 68 211 54 212 58 213 58 214 40 215 47 216 44 217 52 218 37 219 29 220 37 221 34 222 30 223 37 224 28 225 27 226 33 227 25 228 29 229 32 230 31 231 32 232 39 233 38 234 31 235 38 236 32 237 35 238 37 239 21 240 41 241 23 242 28 243 39 244 38 245 25 246 27 247 29 248 26 249 25 250 2703