#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005442-DNA_F02.hs38DH/LP6005442-DNA_F02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_F02.hs38DH/QCmetrics/LP6005442-DNA_F02.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	21.89	24.512	18	3	0	0.068014	0.0024533	0.044072	0.022695	0.28211	0.41935	0.9993	0.99692	0.97279	0.79063	0.40166	0.13595	0.060849	0.038134	0.028061	0.02185	0.018281	0.016125	0.014786	0.013857	0.99603	24	

coverage	high_quality_coverage_count	
0	16473
1	9474
2	11726
3	14746
4	20423
5	31579
6	53323
7	89497
8	150948
9	244892
10	391122
11	587681
12	832330
13	1106068
14	1388561
15	1634961
16	1826454
17	1932832
18	1941118
19	1858388
20	1700409
21	1492975
22	1263302
23	1023579
24	800059
25	608770
26	448461
27	322412
28	230696
29	164859
30	118993
31	87900
32	67086
33	53262
34	44208
35	38119
36	34674
37	32293
38	30576
39	29776
40	28521
41	27424
42	26419
43	25355
44	24373
45	23342
46	22173
47	21133
48	20145
49	19208
50	18092
51	17456
52	16609
53	15983
54	15214
55	14337
56	13223
57	12605
58	11945
59	11346
60	10799
61	10218
62	9577
63	8815
64	8534
65	8082
66	7782
67	7143
68	6866
69	6533
70	6243
71	5997
72	5661
73	5430
74	5147
75	4885
76	4831
77	4387
78	4270
79	4110
80	3815
81	3518
82	3405
83	3250
84	3118
85	3100
86	2967
87	2930
88	2829
89	2724
90	2635
91	2591
92	2417
93	2256
94	2162
95	2125
96	2024
97	1943
98	1968
99	1826
100	1803
101	1757
102	1678
103	1741
104	1710
105	1622
106	1514
107	1552
108	1558
109	1508
110	1590
111	1519
112	1534
113	1476
114	1555
115	1573
116	1490
117	1475
118	1471
119	1427
120	1392
121	1413
122	1378
123	1410
124	1314
125	1331
126	1358
127	1265
128	1252
129	1333
130	1399
131	1313
132	1338
133	1374
134	1372
135	1379
136	1283
137	1256
138	1259
139	1253
140	1254
141	1125
142	1203
143	1223
144	1191
145	1169
146	1115
147	1166
148	1095
149	1124
150	1122
151	1109
152	1137
153	1079
154	1060
155	1100
156	1075
157	1131
158	1080
159	1146
160	1093
161	1034
162	1007
163	1021
164	1009
165	948
166	927
167	912
168	890
169	879
170	862
171	880
172	871
173	842
174	822
175	865
176	790
177	777
178	842
179	820
180	762
181	756
182	740
183	765
184	696
185	697
186	685
187	702
188	709
189	711
190	714
191	721
192	710
193	667
194	659
195	671
196	687
197	634
198	653
199	678
200	724
201	680
202	718
203	657
204	709
205	683
206	656
207	685
208	653
209	654
210	573
211	649
212	646
213	622
214	649
215	634
216	644
217	664
218	629
219	651
220	632
221	639
222	594
223	609
224	602
225	621
226	593
227	646
228	617
229	637
230	569
231	599
232	595
233	561
234	595
235	560
236	578
237	536
238	531
239	532
240	502
241	490
242	526
243	538
244	462
245	470
246	501
247	457
248	477
249	453
250	184595