#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i SGDP/LP6005442-DNA_F04.hs38DH/LP6005442-DNA_F04.hs38DH.cram --algo AlignmentStat SGDP/LP6005442-DNA_F04.hs38DH/QCmetrics/LP6005442-DNA_F04.hs38DH.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	549453366	549453366	1.000000	0	547529754	0.996499	54380259618	510508930	50826119850	49420349156	0.000000	0.003182	0.002603	0.000204	100.000000	545730914	0.996715	0	0.500022	0.017872	0.000003	
SECOND_OF_PAIR	549453366	549453366	1.000000	0	545884360	0.993504	54075249135	508324189	50520043929	48357463819	0.000000	0.003876	0.003292	0.000204	100.000000	545730914	0.999719	0	0.500014	0.018057	0.000091	
PAIR	1098906732	1098906732	1.000000	0	1093414114	0.995002	108455508753	1018833119	101346163779	97777812975	0.000000	0.003528	0.002947	0.000204	100.000000	1091461828	0.998215	0	0.500018	0.017964	0.000047