#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_F04.hs38DH/LP6005442-DNA_F04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_F04.hs38DH/QCmetrics/LP6005442-DNA_F04.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 34.99 11.119 35 5 0 0.016508 0.0013236 0.034623 0.0040208 0.013311 0.069787 0.99853 0.99638 0.99344 0.98772 0.97005 0.90865 0.75288 0.25985 0.034266 0.0082488 0.0055506 0.0041457 0.0032099 0.0025639 0.99738 26 coverage high_quality_coverage_count 0 4045544 1 1676989 2 1450441 3 1385225 4 1384257 5 1415415 6 1479645 7 1569684 8 1714532 9 1912806 10 2164226 11 2525770 12 2981752 13 3608621 14 4437716 15 5546888 16 7036898 17 9041323 18 11720593 19 15203900 20 19721396 21 25418651 22 32397810 23 40764773 24 50411269 25 61308643 26 73125134 27 85526920 28 98023351 29 110074484 30 121191810 31 130739482 32 138278751 33 143419350 34 145909778 35 145640529 36 142652460 37 137195739 38 129580443 39 120217631 40 109577023 41 98189723 42 86524867 43 75024919 44 64005586 45 53764096 46 44443702 47 36222720 48 29086300 49 23063298 50 18043140 51 13978605 52 10715436 53 8142606 54 6159065 55 4640762 56 3500877 57 2663734 58 2047239 59 1603668 60 1282795 61 1054650 62 888324 63 772394 64 685572 65 623990 66 577285 67 538836 68 508356 69 482401 70 461797 71 443017 72 423838 73 407283 74 390901 75 375112 76 359880 77 346693 78 332356 79 319650 80 306689 81 292370 82 281826 83 271245 84 260760 85 249683 86 240622 87 231326 88 223014 89 214005 90 205982 91 198722 92 191595 93 186169 94 178978 95 174013 96 167772 97 162500 98 157075 99 152281 100 146700 101 143080 102 137633 103 133512 104 128266 105 124169 106 119510 107 115725 108 111455 109 107832 110 104057 111 100454 112 96604 113 92755 114 89435 115 86474 116 83853 117 80945 118 78278 119 76169 120 74170 121 71388 122 69276 123 67004 124 65446 125 63737 126 62033 127 59888 128 58543 129 56852 130 55650 131 53645 132 52214 133 50957 134 49477 135 48150 136 47015 137 45754 138 44592 139 43643 140 42535 141 41877 142 40853 143 39785 144 39138 145 38110 146 37696 147 36534 148 35857 149 34987 150 34536 151 33881 152 33127 153 32600 154 31864 155 31666 156 30851 157 29907 158 29463 159 28970 160 28796 161 28506 162 27634 163 27139 164 26654 165 26047 166 26193 167 25305 168 25535 169 24846 170 24499 171 24245 172 23764 173 23500 174 23572 175 23232 176 23086 177 22701 178 22344 179 21842 180 21411 181 21085 182 20664 183 20502 184 20381 185 20053 186 19658 187 19431 188 19094 189 18899 190 18837 191 18315 192 18156 193 17770 194 17761 195 17244 196 17282 197 16614 198 16684 199 16474 200 16125 201 16153 202 15460 203 15460 204 15246 205 15255 206 15035 207 14927 208 14807 209 14387 210 14241 211 13904 212 13722 213 13484 214 13300 215 13180 216 12632 217 12757 218 12462 219 12238 220 12654 221 12211 222 12331 223 12035 224 11714 225 11596 226 11416 227 11399 228 11250 229 11011 230 10827 231 10712 232 10847 233 10528 234 10397 235 10153 236 10078 237 9983 238 9999 239 9678 240 9698 241 9683 242 9409 243 9214 244 9386 245 9194 246 9133 247 8993 248 8781 249 8865 250 1571350