#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005442-DNA_F04.hs38DH/LP6005442-DNA_F04.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_F04.hs38DH/QCmetrics/LP6005442-DNA_F04.hs38DH.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 22.036 25.224 18 3 0 0.060791 0.0011113 0.026648 0.0065334 0.34598 0.44107 0.99889 0.99532 0.96595 0.7753 0.39587 0.13683 0.059458 0.039483 0.033614 0.02838 0.023428 0.019819 0.017294 0.01542 0.99482 23 coverage high_quality_coverage_count 0 26231 1 15702 2 17224 3 22026 4 29437 5 43716 6 67419 7 112283 8 182738 9 288050 10 441882 11 640722 12 880898 13 1142788 14 1400037 15 1622873 16 1789866 17 1874384 18 1878150 19 1802917 20 1649727 21 1447065 22 1224269 23 1004482 24 797335 25 613203 26 460923 27 338100 28 243596 29 172949 30 123063 31 87787 32 64347 33 47498 34 36727 35 29354 36 24650 37 21732 38 19227 39 17737 40 16603 41 15684 42 14960 43 14026 44 13316 45 13264 46 12746 47 12772 48 12514 49 12848 50 12721 51 12287 52 12355 53 12340 54 12162 55 12287 56 12230 57 12498 58 12548 59 12279 60 12356 61 12436 62 12090 63 11967 64 12049 65 11965 66 11596 67 11280 68 10907 69 10414 70 10069 71 9909 72 9545 73 9487 74 8772 75 8220 76 7803 77 7377 78 7224 79 6896 80 6892 81 6520 82 6433 83 6070 84 6041 85 5762 86 5663 87 5504 88 5524 89 5258 90 5112 91 4772 92 4787 93 4581 94 4403 95 4414 96 4161 97 4155 98 3986 99 3921 100 3810 101 3764 102 3596 103 3406 104 3372 105 3253 106 3094 107 2966 108 2893 109 2597 110 2620 111 2462 112 2512 113 2325 114 2362 115 2253 116 2295 117 2133 118 2133 119 2098 120 1926 121 1865 122 1705 123 1698 124 1697 125 1671 126 1581 127 1573 128 1541 129 1459 130 1426 131 1483 132 1451 133 1343 134 1383 135 1445 136 1317 137 1416 138 1397 139 1379 140 1421 141 1506 142 1408 143 1364 144 1331 145 1318 146 1301 147 1304 148 1255 149 1276 150 1318 151 1256 152 1332 153 1208 154 1261 155 1270 156 1219 157 1168 158 1135 159 1145 160 1149 161 1090 162 1024 163 1015 164 1047 165 1006 166 1006 167 999 168 1041 169 1011 170 989 171 962 172 964 173 883 174 910 175 784 176 879 177 856 178 918 179 801 180 927 181 823 182 839 183 842 184 881 185 792 186 831 187 761 188 763 189 780 190 760 191 758 192 752 193 758 194 741 195 715 196 693 197 721 198 705 199 667 200 730 201 704 202 668 203 669 204 698 205 628 206 740 207 658 208 681 209 640 210 631 211 629 212 665 213 613 214 679 215 591 216 603 217 619 218 627 219 616 220 632 221 610 222 594 223 558 224 581 225 555 226 516 227 564 228 595 229 595 230 624 231 613 232 592 233 583 234 610 235 609 236 588 237 617 238 594 239 608 240 582 241 553 242 519 243 494 244 453 245 520 246 552 247 547 248 502 249 555 250 186937