#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_F09.hs38DH/LP6005442-DNA_F09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_F09.hs38DH/QCmetrics/LP6005442-DNA_F09.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 34.669 11.171 34 5 0 0.020224 0.0022895 0.048817 0.0039412 0.012335 0.087606 0.99871 0.99621 0.99295 0.98687 0.96828 0.90452 0.74366 0.24355 0.029641 0.0077153 0.0052859 0.0040315 0.0032354 0.0026738 0.99736 26 coverage high_quality_coverage_count 0 3556637 1 1917535 2 1697709 3 1636128 4 1615332 5 1629595 6 1668817 7 1747969 8 1864088 9 2045760 10 2309157 11 2674516 12 3173484 13 3829582 14 4711501 15 5877375 16 7444090 17 9539997 18 12303971 19 15923629 20 20572168 21 26448955 22 33654994 23 42271075 24 52259598 25 63445385 26 75592114 27 88330251 28 101169677 29 113502762 30 124815179 31 134428726 32 141838069 33 146683414 34 148686690 35 147810478 36 144066481 37 137748295 38 129221584 39 118998618 40 107636761 41 95559229 42 83383129 43 71457085 44 60219158 45 49930879 46 40751230 47 32730670 48 25907700 49 20225187 50 15617660 51 11912902 52 9002501 53 6760901 54 5061138 55 3799552 56 2868469 57 2187600 58 1696463 59 1344430 60 1095238 61 918670 62 791217 63 699754 64 630904 65 577595 66 535948 67 502517 68 474415 69 449698 70 427408 71 405862 72 385913 73 366301 74 349505 75 332065 76 316416 77 301201 78 287756 79 274617 80 262341 81 251297 82 240317 83 229742 84 221218 85 212604 86 202888 87 196408 88 188801 89 182041 90 176184 91 171321 92 165490 93 159579 94 155025 95 150675 96 147141 97 143855 98 138817 99 135221 100 131835 101 128077 102 124977 103 122185 104 120344 105 117121 106 115267 107 111787 108 109078 109 105876 110 103684 111 100397 112 98261 113 95561 114 93031 115 90667 116 88082 117 85658 118 83518 119 80889 120 78523 121 76641 122 74247 123 72646 124 70847 125 68372 126 66371 127 64346 128 62834 129 61538 130 60125 131 58430 132 57320 133 55311 134 53686 135 52629 136 51733 137 50197 138 48889 139 48230 140 46952 141 45795 142 44685 143 43973 144 42843 145 42626 146 41465 147 40499 148 39883 149 38838 150 38229 151 37111 152 36423 153 35886 154 34959 155 34394 156 34053 157 33397 158 32506 159 32696 160 31538 161 30918 162 30424 163 29819 164 29093 165 28451 166 27646 167 27715 168 27484 169 26646 170 26279 171 25982 172 25282 173 24966 174 24729 175 24287 176 23455 177 23445 178 22821 179 22161 180 22255 181 21872 182 21756 183 21244 184 21057 185 20496 186 20279 187 19839 188 19521 189 18987 190 18793 191 18842 192 18500 193 18476 194 17944 195 17916 196 17714 197 17323 198 17041 199 16846 200 16703 201 16500 202 16215 203 16130 204 15926 205 15626 206 15399 207 15204 208 15215 209 14786 210 14190 211 14164 212 14062 213 13584 214 13561 215 13370 216 13343 217 13252 218 13092 219 12972 220 12762 221 12633 222 12453 223 12348 224 12276 225 11907 226 11911 227 11684 228 11715 229 11639 230 11408 231 11387 232 11261 233 11270 234 11112 235 11128 236 10911 237 10583 238 10856 239 10324 240 10426 241 10293 242 10094 243 10134 244 10019 245 9868 246 9769 247 9681 248 9522 249 9515 250 1686942