#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005442-DNA_F09.hs38DH/LP6005442-DNA_F09.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_F09.hs38DH/QCmetrics/LP6005442-DNA_F09.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.3432	17.106	0	0	0	0.053178	0.0049126	0.047598	0.023657	0.37068	0.50003	0.14535	0.067368	0.036566	0.023819	0.017991	0.014928	0.013094	0.010741	0.0093615	0.0084428	0.007781	0.0072521	0.0068116	0.0064303	0.10635	0	

coverage	high_quality_coverage_count	
0	20200872
1	781892
2	467822
3	332475
4	260966
5	207672
6	169611
7	139945
8	114719
9	96093
10	81453
11	67994
12	59257
13	50184
14	42403
15	36240
16	30968
17	26620
18	23142
19	20783
20	17926
21	16110
22	14036
23	12898
24	11419
25	9984
26	9169
27	8477
28	8056
29	7682
30	7528
31	6819
32	6155
33	5927
34	5459
35	5210
36	4761
37	4690
38	4631
39	4425
40	4110
41	4040
42	3632
43	3611
44	3353
45	3194
46	2879
47	2736
48	2582
49	2474
50	2458
51	2366
52	2374
53	2454
54	2139
55	2171
56	2070
57	1858
58	1908
59	1915
60	1801
61	1748
62	1746
63	1559
64	1555
65	1515
66	1407
67	1492
68	1425
69	1396
70	1303
71	1400
72	1308
73	1331
74	1246
75	1254
76	1217
77	1179
78	1143
79	1120
80	1106
81	1066
82	1042
83	1101
84	1056
85	1054
86	1020
87	974
88	1030
89	963
90	1007
91	970
92	917
93	932
94	839
95	899
96	871
97	895
98	855
99	828
100	836
101	877
102	843
103	875
104	901
105	853
106	821
107	817
108	827
109	850
110	844
111	798
112	815
113	810
114	806
115	773
116	802
117	696
118	809
119	776
120	821
121	848
122	825
123	819
124	792
125	818
126	893
127	829
128	827
129	808
130	807
131	848
132	645
133	746
134	722
135	712
136	654
137	728
138	683
139	685
140	671
141	662
142	666
143	670
144	653
145	617
146	611
147	599
148	611
149	627
150	585
151	581
152	618
153	667
154	643
155	600
156	624
157	641
158	706
159	691
160	623
161	668
162	579
163	648
164	621
165	638
166	660
167	662
168	686
169	716
170	688
171	659
172	619
173	672
174	648
175	684
176	676
177	686
178	666
179	712
180	695
181	665
182	688
183	694
184	620
185	698
186	598
187	682
188	633
189	669
190	674
191	678
192	639
193	639
194	652
195	625
196	618
197	655
198	584
199	623
200	570
201	617
202	565
203	548
204	574
205	543
206	560
207	546
208	519
209	472
210	502
211	501
212	552
213	481
214	476
215	491
216	435
217	428
218	471
219	445
220	478
221	424
222	410
223	441
224	425
225	428
226	395
227	433
228	419
229	411
230	373
231	372
232	357
233	369
234	388
235	355
236	359
237	321
238	337
239	295
240	309
241	313
242	303
243	282
244	272
245	276
246	265
247	244
248	274
249	266
250	60176