#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i SGDP/LP6005442-DNA_G10.hs38DH/LP6005442-DNA_G10.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_G10.hs38DH/QCmetrics/LP6005442-DNA_G10.hs38DH.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 18.682 5.7429 19 3 0 0.014133 0.0023903 0.049892 0.0044994 0.00015703 0.071072 0.99776 0.99007 0.96316 0.80085 0.42318 0.12097 0.022283 0.0029572 0.0012077 0.00062245 0.00038929 0.00027809 0.00020636 0.00015535 0.99191 21 coverage high_quality_coverage_count 0 340801 1 253003 2 276971 3 301801 4 338130 5 389947 6 489946 7 681310 8 1007587 9 1524318 10 2301486 11 3365946 12 4721345 13 6299871 14 8001705 15 9636234 16 11024952 17 11981962 18 12457704 19 12347718 20 11720651 21 10676814 22 9340323 23 7859165 24 6372763 25 5008182 26 3800866 27 2799862 28 2002354 29 1401015 30 957501 31 643706 32 430116 33 289193 34 196211 35 136407 36 99293 37 75697 38 60971 39 50677 40 42934 41 37552 42 33207 43 29762 44 26640 45 23772 46 21344 47 18939 48 16870 49 15107 50 13755 51 12303 52 10933 53 9595 54 8819 55 8096 56 7316 57 6670 58 6034 59 5506 60 5087 61 4520 62 4212 63 3764 64 3550 65 3285 66 3038 67 2897 68 2714 69 2400 70 2283 71 2023 72 1834 73 1759 74 1676 75 1574 76 1443 77 1495 78 1454 79 1374 80 1283 81 1189 82 1199 83 1196 84 1130 85 1062 86 998 87 949 88 932 89 972 90 887 91 907 92 819 93 828 94 796 95 805 96 733 97 691 98 667 99 627 100 633 101 645 102 597 103 559 104 554 105 524 106 470 107 438 108 458 109 426 110 443 111 447 112 431 113 449 114 411 115 404 116 396 117 383 118 348 119 351 120 344 121 299 122 310 123 304 124 314 125 299 126 262 127 239 128 258 129 265 130 212 131 240 132 186 133 200 134 199 135 198 136 188 137 183 138 195 139 194 140 200 141 195 142 200 143 161 144 178 145 170 146 160 147 171 148 161 149 153 150 133 151 153 152 156 153 131 154 123 155 104 156 113 157 117 158 127 159 85 160 98 161 92 162 112 163 110 164 82 165 82 166 81 167 85 168 64 169 101 170 72 171 78 172 68 173 73 174 70 175 54 176 63 177 71 178 64 179 68 180 74 181 77 182 59 183 74 184 64 185 70 186 73 187 74 188 71 189 51 190 60 191 63 192 81 193 56 194 61 195 69 196 54 197 49 198 79 199 62 200 54 201 54 202 57 203 39 204 51 205 50 206 46 207 49 208 44 209 61 210 38 211 38 212 49 213 38 214 33 215 41 216 45 217 46 218 48 219 40 220 42 221 49 222 56 223 51 224 45 225 42 226 38 227 41 228 32 229 31 230 42 231 44 232 31 233 38 234 21 235 23 236 18 237 25 238 21 239 13 240 14 241 22 242 13 243 18 244 19 245 18 246 22 247 22 248 13 249 8 250 1682