#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005442-DNA_H11.hs38DH/LP6005442-DNA_H11.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005442-DNA_H11.hs38DH/QCmetrics/LP6005442-DNA_H11.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 34.862 10.974 35 5 0 0.018473 0.0010219 0.041118 0.0044171 0.011072 0.076102 0.99838 0.9955 0.99237 0.98718 0.97224 0.9175 0.76229 0.24299 0.028218 0.0077591 0.0053378 0.0040342 0.003182 0.0025967 0.99686 25 coverage high_quality_coverage_count 0 4440216 1 2339606 2 2000354 3 1841507 4 1730522 5 1670602 6 1651239 7 1673086 8 1747998 9 1871433 10 2061795 11 2340530 12 2718678 13 3232763 14 3911294 15 4809824 16 6004799 17 7632667 18 9826053 19 12774857 20 16732836 21 21887760 22 28507013 23 36710239 24 46596041 25 58120687 26 70993701 27 84885943 28 99219145 29 113280591 30 126338843 31 137741939 32 146695171 33 152718661 34 155474922 35 154852685 36 150959556 37 144077599 38 134727290 39 123445299 40 110904862 41 97806081 42 84632730 43 71907258 44 60032656 45 49305149 46 39831645 47 31691030 48 24839127 49 19226516 50 14707169 51 11130660 52 8365825 53 6261967 54 4676142 55 3507725 56 2654757 57 2038519 58 1597047 59 1280932 60 1057764 61 897001 62 781376 63 697221 64 635427 65 585500 66 544665 67 511289 68 483736 69 459785 70 437288 71 416618 72 395865 73 377639 74 361239 75 346243 76 331204 77 317730 78 305306 79 293078 80 280294 81 268148 82 257377 83 245960 84 236628 85 227444 86 218246 87 210174 88 202920 89 194782 90 187029 91 180812 92 174430 93 168277 94 162448 95 157560 96 151900 97 145976 98 142071 99 137804 100 132943 101 129574 102 125256 103 121812 104 117688 105 114262 106 110216 107 106372 108 103422 109 99798 110 97240 111 93363 112 90327 113 87695 114 85293 115 83492 116 81318 117 79300 118 77192 119 74545 120 72895 121 71053 122 68979 123 67956 124 65973 125 64198 126 62722 127 61098 128 59457 129 58436 130 57014 131 55620 132 54597 133 53112 134 52423 135 51038 136 49926 137 48889 138 47528 139 47165 140 46369 141 45311 142 44135 143 43490 144 42026 145 41740 146 40785 147 40431 148 39400 149 39048 150 38418 151 37625 152 37279 153 36134 154 35589 155 35112 156 34525 157 33747 158 33380 159 32679 160 32635 161 32044 162 31682 163 30819 164 30150 165 29599 166 29581 167 28380 168 28256 169 27933 170 27509 171 27092 172 26506 173 26139 174 25917 175 25281 176 24881 177 24426 178 23880 179 23521 180 23149 181 22663 182 22090 183 22086 184 21611 185 21182 186 20672 187 20253 188 19965 189 19734 190 19415 191 18889 192 18358 193 18258 194 17902 195 17734 196 17271 197 16801 198 16448 199 16227 200 16079 201 15720 202 15559 203 15050 204 15030 205 14844 206 14492 207 14105 208 13864 209 13796 210 13456 211 13371 212 13380 213 12914 214 12971 215 12691 216 12730 217 12366 218 12293 219 12284 220 11864 221 12008 222 11720 223 11821 224 11449 225 11429 226 11288 227 11173 228 11276 229 11146 230 10902 231 10673 232 10697 233 10599 234 10356 235 10313 236 10050 237 10029 238 10073 239 9761 240 9589 241 9708 242 9450 243 9416 244 9304 245 9175 246 9117 247 9244 248 8901 249 8947 250 1641767