#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005443-DNA_B02.hs38DH/LP6005443-DNA_B02.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_B02.hs38DH/QCmetrics/LP6005443-DNA_B02.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 47.118 13.678 47 6 0 0.022812 0.0012299 0.051921 0.005827 0.011927 0.093716 0.99885 0.99732 0.99546 0.99299 0.98869 0.97964 0.95775 0.78617 0.38203 0.086197 0.015931 0.0082104 0.0063661 0.0051933 0.99804 27 coverage high_quality_coverage_count 0 3152482 1 1241389 2 1038468 3 977196 4 966808 5 972825 6 984672 7 1010298 8 1046683 9 1094113 10 1158355 11 1234675 12 1332701 13 1455561 14 1604492 15 1795369 16 2026653 17 2302588 18 2640985 19 3047786 20 3532322 21 4113997 22 4818098 23 5680381 24 6729936 25 8024523 26 9619338 27 11584319 28 13991316 29 16914104 30 20416331 31 24582901 32 29451686 33 35052081 34 41352176 35 48325863 36 55851832 37 63847409 38 72136131 39 80487113 40 88674643 41 96481484 42 103592212 43 109776414 44 114774964 45 118393439 46 120530376 47 121050470 48 119962253 49 117332699 50 113264000 51 107905298 52 101491382 53 94229619 54 86336586 55 78110444 56 69814954 57 61645035 58 53757014 59 46378610 60 39533110 61 33314364 62 27782166 63 22932869 64 18730180 65 15165594 66 12176116 67 9704064 68 7688373 69 6063995 70 4771277 71 3757707 72 2960895 73 2350027 74 1877371 75 1520250 76 1252118 77 1048582 78 894596 79 781882 80 694040 81 624584 82 573285 83 531115 84 499368 85 471433 86 447311 87 427077 88 408233 89 391595 90 378026 91 362536 92 349448 93 337766 94 325983 95 313866 96 303402 97 293857 98 284202 99 273952 100 266338 101 256353 102 249213 103 240668 104 232755 105 226777 106 220179 107 213689 108 207844 109 201843 110 196503 111 190371 112 185273 113 180748 114 176206 115 172666 116 167493 117 164066 118 160199 119 156588 120 153133 121 150046 122 146507 123 144884 124 141154 125 139065 126 135625 127 133694 128 130969 129 129212 130 126317 131 124820 132 121749 133 120360 134 118204 135 115631 136 113244 137 110962 138 109421 139 107071 140 104986 141 103586 142 101227 143 99394 144 97639 145 96128 146 93952 147 92006 148 89560 149 88151 150 86586 151 84388 152 81832 153 80772 154 78895 155 77710 156 75920 157 74519 158 72620 159 70922 160 69809 161 68145 162 67365 163 65257 164 63313 165 62513 166 60834 167 59683 168 58865 169 57892 170 56853 171 55366 172 54957 173 53964 174 52982 175 52029 176 51292 177 50561 178 49374 179 48144 180 47538 181 46429 182 45516 183 44882 184 43934 185 43047 186 42517 187 42011 188 40938 189 40894 190 39630 191 39096 192 38317 193 37527 194 36693 195 36217 196 35564 197 35070 198 34215 199 34237 200 33339 201 32571 202 32385 203 31899 204 31151 205 30629 206 30113 207 30030 208 29422 209 28836 210 28204 211 28011 212 27521 213 27330 214 26774 215 26338 216 25778 217 25563 218 25074 219 24945 220 24648 221 23829 222 23971 223 23705 224 23331 225 23146 226 22718 227 22196 228 22010 229 21915 230 21569 231 20936 232 20835 233 20706 234 20465 235 20273 236 20101 237 19765 238 19509 239 19442 240 19349 241 18778 242 18613 243 18419 244 18281 245 17819 246 17623 247 17471 248 17070 249 17205 250 2727203