#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005443-DNA_D05.hs38DH/LP6005443-DNA_D05.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_D05.hs38DH/QCmetrics/LP6005443-DNA_D05.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 43.611 13.06 43 6 0 0.022171 0.0014675 0.054172 0.0045604 0.013274 0.095645 0.99863 0.99677 0.99462 0.99168 0.986 0.97238 0.93527 0.6697 0.23478 0.037942 0.010101 0.0069995 0.0055293 0.0044858 0.99763 26 coverage high_quality_coverage_count 0 3768317 1 1514659 2 1268993 3 1182988 4 1154187 5 1135472 6 1140909 7 1162097 8 1200235 9 1253046 10 1332539 11 1438528 12 1579296 13 1759298 14 1978318 15 2252426 16 2602103 17 3025059 18 3540973 19 4175310 20 4972036 21 5951159 22 7172987 23 8706742 24 10629855 25 13017386 26 15986197 27 19631840 28 24047991 29 29281427 30 35405404 31 42403147 32 50174258 33 58683442 34 67718541 35 77091052 36 86520190 37 95657510 38 104236016 39 111912945 40 118333897 41 123285613 42 126548131 43 128003278 44 127541854 45 125254314 46 121191461 47 115586708 48 108674570 49 100707826 50 92047841 51 82964763 52 73730034 53 64672175 54 55950271 55 47775199 56 40264653 57 33523455 58 27570337 59 22410473 60 18030111 61 14341923 62 11311350 63 8847507 64 6883820 65 5327858 66 4118474 67 3193298 68 2490849 69 1961265 70 1567141 71 1274063 72 1058715 73 898502 74 781575 75 693233 76 628552 77 577523 78 537518 79 505891 80 480280 81 459942 82 440696 83 422414 84 406836 85 390913 86 378095 87 365867 88 353764 89 341340 90 331530 91 319896 92 308855 93 299235 94 289691 95 281638 96 271315 97 263466 98 254733 99 247063 100 238714 101 231227 102 224064 103 216811 104 210486 105 203683 106 197156 107 191576 108 186064 109 180695 110 174608 111 170274 112 166099 113 162174 114 158216 115 154486 116 149581 117 145943 118 142148 119 138205 120 134577 121 132028 122 128951 123 125148 124 122353 125 119967 126 116805 127 114601 128 112521 129 109424 130 106669 131 104594 132 102445 133 99835 134 97778 135 95648 136 93772 137 91824 138 89663 139 87443 140 85642 141 83556 142 81155 143 79388 144 77060 145 76100 146 74543 147 72775 148 71289 149 69454 150 68948 151 67199 152 65275 153 64667 154 62410 155 61587 156 60206 157 59006 158 57655 159 56674 160 55510 161 54001 162 53093 163 51907 164 51265 165 49562 166 48888 167 47834 168 46898 169 45992 170 45128 171 44672 172 43733 173 42975 174 42430 175 41639 176 40549 177 39933 178 39440 179 38899 180 38273 181 37434 182 37181 183 36431 184 35901 185 35284 186 34974 187 34224 188 33796 189 33229 190 32893 191 32722 192 31943 193 31525 194 30805 195 30382 196 30142 197 29555 198 29074 199 28659 200 28228 201 27747 202 27449 203 27214 204 26791 205 26216 206 26047 207 25852 208 25330 209 25336 210 25270 211 24691 212 24090 213 23772 214 23475 215 23241 216 22758 217 22369 218 22371 219 21945 220 21685 221 21413 222 21100 223 20692 224 20671 225 20350 226 20095 227 19714 228 19448 229 19592 230 19053 231 18587 232 18390 233 18328 234 17935 235 17648 236 17650 237 17171 238 16975 239 17025 240 16484 241 16260 242 16261 243 16045 244 15712 245 15591 246 15489 247 15059 248 15145 249 15108 250 2474428