#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i SGDP/LP6005443-DNA_D05.hs38DH/LP6005443-DNA_D05.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_D05.hs38DH/QCmetrics/LP6005443-DNA_D05.hs38DH.WgsMetrics.chrY.txt
GENOME_TERRITORY	MEAN_COVERAGE	SD_COVERAGE	MEDIAN_COVERAGE	MAD_COVERAGE	PCT_EXC_MAPQ	PCT_EXC_DUPE	PCT_EXC_UNPAIRED	PCT_EXC_BASEQ	PCT_EXC_OVERLAP	PCT_EXC_CAPPED	PCT_EXC_TOTAL	PCT_1X	PCT_5X	PCT_10X	PCT_15X	PCT_20X	PCT_25X	PCT_30X	PCT_40X	PCT_50X	PCT_60X	PCT_70X	PCT_80X	PCT_90X	PCT_100X	HET_SNP_SENSITIVITY	HET_SNP_Q	
23636355	2.7782	19.044	0	0	0	0.06242	0.0040355	0.048836	0.025728	0.4226	0.56362	0.15149	0.075603	0.043887	0.029585	0.022036	0.01796	0.015521	0.01271	0.011184	0.010169	0.0093684	0.0087318	0.0082195	0.0077681	0.1126	1	

coverage	high_quality_coverage_count	
0	20055761
1	774047
2	446853
3	320674
4	252047
5	209154
6	171906
7	143068
8	123447
9	102061
10	87934
11	74447
12	66226
13	58063
14	51380
15	44954
16	39655
17	35277
18	31272
19	27277
20	24238
21	21219
22	18880
23	16708
24	15305
25	14054
26	12428
27	11204
28	10321
29	9641
30	9092
31	8295
32	7738
33	7253
34	6761
35	6386
36	5797
37	5278
38	4973
39	4865
40	4498
41	4330
42	3935
43	3770
44	3627
45	3527
46	3342
47	3142
48	2985
49	2900
50	2806
51	2726
52	2654
53	2515
54	2507
55	2404
56	2206
57	2090
58	2058
59	2036
60	1974
61	1975
62	2014
63	1962
64	1870
65	1765
66	1828
67	1819
68	1858
69	1859
70	1716
71	1646
72	1601
73	1552
74	1526
75	1507
76	1383
77	1418
78	1345
79	1351
80	1290
81	1283
82	1241
83	1262
84	1211
85	1242
86	1169
87	1187
88	1123
89	1103
90	1093
91	1122
92	1059
93	1030
94	1084
95	1000
96	1069
97	1084
98	1024
99	1103
100	1030
101	998
102	1022
103	1017
104	981
105	1011
106	914
107	922
108	927
109	994
110	971
111	916
112	908
113	941
114	1019
115	952
116	910
117	893
118	891
119	875
120	892
121	879
122	860
123	876
124	872
125	902
126	874
127	932
128	971
129	948
130	922
131	982
132	958
133	904
134	915
135	938
136	961
137	916
138	972
139	1000
140	909
141	887
142	919
143	909
144	912
145	900
146	905
147	853
148	893
149	879
150	879
151	854
152	837
153	828
154	833
155	773
156	785
157	847
158	817
159	796
160	809
161	827
162	894
163	790
164	824
165	742
166	705
167	718
168	677
169	724
170	718
171	645
172	666
173	643
174	595
175	637
176	579
177	576
178	555
179	603
180	590
181	581
182	570
183	556
184	543
185	545
186	522
187	473
188	499
189	491
190	513
191	509
192	492
193	510
194	476
195	462
196	446
197	479
198	505
199	492
200	493
201	452
202	474
203	451
204	466
205	406
206	400
207	449
208	432
209	423
210	431
211	407
212	454
213	487
214	461
215	455
216	437
217	446
218	465
219	460
220	468
221	476
222	465
223	455
224	416
225	415
226	488
227	459
228	454
229	475
230	402
231	434
232	433
233	421
234	457
235	449
236	428
237	471
238	403
239	421
240	426
241	361
242	390
243	431
244	382
245	376
246	373
247	360
248	336
249	355
250	83019