#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i SGDP/LP6005443-DNA_E05.hs38DH/LP6005443-DNA_E05.hs38DH.cram --algo WgsMetricsAlgo --min_map_qual 0 SGDP/LP6005443-DNA_E05.hs38DH/QCmetrics/LP6005443-DNA_E05.hs38DH.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 42.18 13.342 42 6 0 0.019927 0.0012946 0.05311 0.0031743 0.01438 0.091885 0.99869 0.9968 0.99455 0.99111 0.98342 0.96264 0.90784 0.6012 0.19541 0.03239 0.0098872 0.0070087 0.0055662 0.0045194 0.99768 26 coverage high_quality_coverage_count 0 3594273 1 1532953 2 1286402 3 1199875 4 1170189 5 1161026 6 1173300 7 1214621 8 1277389 9 1363525 10 1477666 11 1632173 12 1833607 13 2098135 14 2425835 15 2843212 16 3380967 17 4047565 18 4894646 19 5950922 20 7275267 21 8916079 22 10950558 23 13456230 24 16501690 25 20127219 26 24413109 27 29396592 28 35111596 29 41536143 30 48632649 31 56278693 32 64392908 33 72787220 34 81281606 35 89617980 36 97541201 37 104804443 38 111107190 39 116208415 40 119954670 41 122202392 42 122804401 43 121749918 44 119086994 45 114889919 46 109376497 47 102730306 48 95205353 49 87079168 50 78578597 51 70019981 52 61587749 53 53489018 54 45890721 55 38893228 56 32573789 57 26962744 58 22085945 59 17901429 60 14385685 61 11456078 62 9055897 63 7111572 64 5563970 65 4355573 66 3407986 67 2677640 68 2122810 69 1700610 70 1385408 71 1147452 72 970295 73 834835 74 736727 75 661295 76 602251 77 555841 78 521970 79 493880 80 469636 81 449515 82 429859 83 413158 84 399185 85 384001 86 372360 87 359313 88 349334 89 337547 90 328035 91 318388 92 309673 93 299628 94 291214 95 281895 96 273693 97 266768 98 257622 99 249862 100 244214 101 236318 102 229897 103 222406 104 215902 105 209319 106 203324 107 197194 108 191615 109 186244 110 180489 111 176149 112 170682 113 164848 114 161045 115 155684 116 151061 117 147504 118 142674 119 138951 120 134751 121 131916 122 128028 123 124097 124 121191 125 117523 126 114520 127 111291 128 109272 129 106417 130 104134 131 101131 132 98971 133 96570 134 94280 135 91579 136 89437 137 87979 138 85641 139 84857 140 82198 141 80841 142 79162 143 77346 144 76026 145 73848 146 72794 147 70769 148 69739 149 68087 150 66648 151 65157 152 63612 153 62830 154 61068 155 59550 156 58804 157 57461 158 56426 159 55236 160 54599 161 53079 162 51800 163 51570 164 50518 165 49647 166 48194 167 47623 168 46236 169 46194 170 45005 171 44525 172 43653 173 42865 174 42069 175 41775 176 40817 177 40369 178 39742 179 39570 180 38839 181 38059 182 37254 183 36831 184 36286 185 35830 186 35031 187 34384 188 33979 189 33640 190 32852 191 32303 192 31836 193 31334 194 30848 195 30828 196 30037 197 29546 198 29227 199 28661 200 28028 201 28325 202 27675 203 27202 204 26903 205 26180 206 26168 207 25689 208 25280 209 24798 210 24570 211 23981 212 23923 213 23573 214 23289 215 23088 216 22617 217 22160 218 22203 219 21958 220 21226 221 21184 222 20724 223 20396 224 20368 225 20166 226 19448 227 19298 228 19239 229 19096 230 18611 231 18490 232 18465 233 18310 234 17808 235 17792 236 17801 237 17406 238 17220 239 17075 240 16998 241 16775 242 16289 243 16258 244 16021 245 15986 246 15561 247 15361 248 15406 249 14976 250 2577509